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Berkeley - PMB - 110
The Encyclopedia of Life (EOL) Assignment The Encyclopedia of Life (EOL) is a web-based, Wikipedia-like, initiative to produce a webpage for all species. Mycology courses at Berkeley, Harvard, Oregon State and University of Wisconsin LaCrosse are pil
Berkeley - PMB - 110
PMB110SmutsF2008Smuts a highly polyphyletic group - all plant pathogens Simple morphology - teliospore, gasteroid basidia" (i.e., without active discharge), haploids grow as yeasts, dikaryons filamentous and plant pathogenic. Three large group
Berkeley - PMB - 21
PMB110SmutsF2008Smuts a highly polyphyletic group - all plant pathogens Simple morphology - teliospore, gasteroid basidia" (i.e., without active discharge), haploids grow as yeasts, dikaryons filamentous and plant pathogenic. Three large group
Berkeley - PMB - 07
Phytophthora infestans Lifecycle from AlexopolousFrom Judelson 1997 Phytophthora mating with mating types GUStransformedPhytophthora infestans, late blight of potatoSudden Oak Death, Phytophthora ramorum, Marin Co. 2001Piece of Reimller et al
Berkeley - PMB - 110
Phytophthora infestans Lifecycle from AlexopolousFrom Judelson 1997 Phytophthora mating with mating types GUStransformedPhytophthora infestans, late blight of potatoSudden Oak Death, Phytophthora ramorum, Marin Co. 2001Piece of Reimller et al
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 18. Ascomycota Pezizomycotina. Dothidiomycetes, Chaetothyriomycetes November 3, 2008 Dothidiomycetes Fissitunicate ascus. Broken-walled ascus. Also known as a bitunicate (two-walle
Berkeley - PMB - 18
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 18. Ascomycota Pezizomycotina. Dothidiomycetes, Chaetothyriomycetes November 3, 2008 Dothidiomycetes Fissitunicate ascus. Broken-walled ascus. Also known as a bitunicate (two-walle
Berkeley - PMB - 10
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Industrial Mycology Field Trip II, Mushroom Farm. October 18, 2008Lecture 10. Chytridiales II - October 1, 2008Chytridiomycota, 112 genera, 793 species. Chytridiales, Spizellomycetales,
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Industrial Mycology Field Trip II, Mushroom Farm. October 18, 2008Lecture 10. Chytridiales II - October 1, 2008Chytridiomycota, 112 genera, 793 species. Chytridiales, Spizellomycetales,
Berkeley - PMB - 110
Biology of Fungi PMB 110John Taylor & Tom BrunsWhat are Fungi? Where are Fungi in the Tree of Life? Whats Inside the Fungal Kingdom? How do fungi earn a living?MushroomsParasol MushroomMacrolepiota proceraThree Parts of a Mushroom - C. T. I
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Mendocino Mushroom Foray, November 22-23 Lecture 16. Ascomycota Pezizomycotina. Sordariomycetes - October 27, 2008 Pezizomycotina: Sordariomycetes, perithecial Pezizomycotina today. Perithe
Berkeley - PMB - 16
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Mendocino Mushroom Foray, November 22-23 Lecture 16. Ascomycota Pezizomycotina. Sordariomycetes - October 27, 2008 Pezizomycotina: Sordariomycetes, perithecial Pezizomycotina today. Perithe
Berkeley - PMB - 04
Biology of Fungi PMB 110John Taylor & Tom BrunsLecture 4 Labyrinthulomycota & PlasmodiophoromycotaParasexuality Fusion between two, genetically similar individuals. Occasional fusion of nuclei to make 2N. Mitosis with occasional crossing over. A
Berkeley - PMB - 110
Biology of Fungi PMB 110John Taylor & Tom BrunsLecture 4 Labyrinthulomycota & PlasmodiophoromycotaParasexuality Fusion between two, genetically similar individuals. Occasional fusion of nuclei to make 2N. Mitosis with occasional crossing over. A
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 3. Acrasiomycota & Dictyosteliomycota - September 8, 2008 Slime Molds Amoebozoa Myxomycota, Myxogastromycetes 60 genera, 690 species Myxomycota, Ceratiomyxomycetes 14 genera, 29 s
Berkeley - PMB - 04
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 4. Labyrinthulomycota & Plasmodiophoromycota - September 10, 2008 Field Trip coming up, September 13th to Merryvale Winery Slime Molds Dictyosteliomycota Parasexuality Stramenopila
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 4. Labyrinthulomycota & Plasmodiophoromycota - September 10, 2008 Field Trip coming up, September 13th to Merryvale Winery Slime Molds Dictyosteliomycota Parasexuality Stramenopila
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 8. Introduction to Chytridiomycota & Blastocladiales - September 24, 2008 The first of the Fungi, the Kingdom Fungi or the True Fungi. Chytridiomycota, 112 genera, 793 species. Sapr
Berkeley - PMB - 110
Biology of Fungi PMB 110John Taylor & Tom BrunsLecture 2. MyxomycotaSlime MoldsKingdom AmoebozoaMyxomycota Dictyosteliomycota Kingdom Discicristates AcrasiomycotaKingdom CercozoaPlasmodiophoromycotaKindgom StramenopilaLabyrinthulomycota
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 14. Ascomycota Introduction - October 20, 2008Ascomycota, The Big Phylum: 65% of described fungi, 50,000 to 60,000 species. Almost all of the human pathogens, most of the plant pat
Berkeley - PMB - 14
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 14. Ascomycota Introduction - October 20, 2008Ascomycota, The Big Phylum: 65% of described fungi, 50,000 to 60,000 species. Almost all of the human pathogens, most of the plant pat
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Mendocino Mushroom Foray November 22-23, 2008 Lecture 17. Ascomycota Pezizomycotina. Sordariomycetes2 October 29, 2008 Pezizomycotina: Sordariomycetes Sordariales Neurospora Chaetomium sa
Berkeley - PMB - 17
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Mendocino Mushroom Foray November 22-23, 2008 Lecture 17. Ascomycota Pezizomycotina. Sordariomycetes2 October 29, 2008 Pezizomycotina: Sordariomycetes Sordariales Neurospora Chaetomium sa
Berkeley - PMB - 110
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 19. Ascomycota Pezizomycotina. Pezizomycetes, Leotiomycetes, Lecanoromycetes, Laboulbeniomycetes November 5, 2008 Apothecial Ascomycota, Cup fungi, or Discomycetes Life cycle, typic
Berkeley - PMB - 19
PMB 110, Biology of FungiJ. Taylor and T. Bruns Fall 2008Lecture 19. Ascomycota Pezizomycotina. Pezizomycetes, Leotiomycetes, Lecanoromycetes, Laboulbeniomycetes November 5, 2008 Apothecial Ascomycota, Cup fungi, or Discomycetes Life cycle, typic
Berkeley - PMB - 290
Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coliTim F. Cooper*, Daniel E. Rozen, and Richard E. LenskiCenter for Microbial Ecology, Michigan State University, East Lansing, MI 48824 Edited by Allan Campb
Berkeley - PMB - 290
MethodPathway Processor: A Tool for Integrating Whole-Genome Expression Results into Metabolic NetworksPaul Grosu,1 Jeffrey P. Townsend,1,2 Daniel L. Hartl,2 and Duccio Cavalieri1,3Bauer Center for Genomics Research, Harvard University, Cambridge
Berkeley - PMB - 290
A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivityGeoff W. Birrell*, Guri Giaever, Angela M. Chu, Ronald W. Davis, and J. Martin Brown*Departments of *Radiation Oncology and Biochemistry, Stanford Universi
Berkeley - PMB - 290
Copyright 2003 by the Genetics Society of AmericaGenetic Diversity in Yeast Assessed With Whole-Genome Oligonucleotide ArraysElizabeth A. Winzeler,*,1 Cristian I. Castillo-Davis, Guy Oshiro,* David Liang,* Daniel R. Richards, Yingyao Zhou* and Da
Berkeley - PMB - 290
DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coliArkady B. Khodursky*, Brian J. Peter, Nicholas R. Cozzarelli, David Botstein, Patrick O. Brown*, and Cha
Berkeley - PMB - 290
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiaeYoav Arava*, Yulei Wang*, John D. Storey, Chih Long Liu*, Patrick O. Brown*, and Daniel Herschlag**Department of Biochemistry, Stanford University, Stanford, CA 94305-5307
Berkeley - PMB - 290
Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agentsGeoff W. Birrell*, James A. Brown*, H. Irene Wu*, Guri Giaever, Angela M. Chu, Ronald W. Davis, and J. Martin Br
Berkeley - PMB - 290
Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiaeJennifer L. Gerton*, Joseph DeRisi, Robert Shroff, Michael Lichten, Patrick O. Brown, and Thomas D. Petes**Department of Biology and Curriculum in G
Berkeley - PMB - 290
Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiaeAdam M. Deutschbauer*, Roy M. Williams, Angela M. Chu, and Ronald W. Davis*Departments of *Genetics and Biochemistry, Stanford University School of Me
Berkeley - PMB - 290
Toward a protein profile of Escherichia coli: Comparison to its transcription profileRebecca W. Corbin*, Oleg Paliy, Feng Yang*, Jeffrey Shabanowitz*, Mark Platt*, Charles E. Lyons, Jr.*, Karen Root*, Jon McAuliffe, Michael I. Jordan, Sydney Kustu ,
Berkeley - PROP - 13
Bill.Fischel@Dartmouth.edu 6 June 2008Fischel, William A.1989. Did Serrano Cause Proposition 13? National Tax Journal 42: 465-474. _ 1996. How Serrano Caused Proposition 13. Journal of Law and Politics 12: 607-645. _ Did John Serrano Vote for Propo
Berkeley - PRESENTATI - 2001
University of California, Riverside Bourns College of EngineeringModeling Energy and Emissions from Heavy Duty Diesel VehiclesCalifornia PATH Program-Wide Research Meeting October 17-18, 2001Presented By: Matthew Barth University of California, R
Berkeley - PH - 240
PH 240D Biostatistical Methods: Applications of Statistics to Genetics and Molecular Biology Spring 2003Time Location CCN Units Instructor. Sandrine Dudoit E-mail: sandrine@stat.berkeley.edu Website: www.stat.berkeley.edu/~sandrine Oce hours: Tu 3:
Berkeley - BIRS - 04
Asymmetric Laplace Distribution for Gene Expression DataIntroductionThe distribution of the normalized gene expressions, while similar for different arrays, is often far from normal regardless of the normalization methods. Rather, the distribution
Berkeley - BIRS - 04
Software design for loss-based estimation with the D/S/A algorithmKasper Daniel Hansenjoint work with Sandrine Dudoit and Mark van der LaanIntroduction (1) This poster deals with the implementation in R of the estimation road map proposed by van d
Berkeley - BIRS - 04
Statistics and Sequence AlignmentLior Pachter Department of Mathematics U.C. BerkeleyJoint work with Marina Alexandersson, Nicolas Bray, Colin Dewey , Simon Cawley, Colin Dewey, Fumei Lam and Bernd SturmfelsQuickTime and a TIFF (Uncompressed) dec
Berkeley - BIRS - 04
Graphical Modeling for Many Variables, and an Application to Genetic Regulatory SubnetworksPeter Buhlmann ETH Zurich 11. Associations between Variableswell studied framework: determine presence/absence of associations between random variables
Berkeley - BIRS - 04
S S GectionONtatistical eneticsDavid B. Allison, Ph.D. ProfessorDepartment of Biostatistics Dept of Nutrition Sciences Clinical Nutrition Research Unit School of Public HealthRecruitment actively underway for post-doctoral fellows research
Berkeley - BIRS - 04
The Application of Multiple Testing Procedures to Detect Genotype/Phenotype Associations.Merrill Birkner (1), Mlanie Courtine (2), Sandrine Dudoit (1), e Mark van der Laan (1), Karine Clment (2), and Jean-Daniel Zucker (2) e1 Division of Biostati
Berkeley - BIRS - 04
Semantic web methodologies for statistical genomics VJ Carey Banff 2004 !"#Overviewmotivations: needs and benets of explicit semantics examples: reading a journal with R extracting design ontology from MAGE-OM P
Berkeley - BIRS - 04
Studying the Immune System and Cancer with Multivariate Statistics and MicroarraysSusan Holmes Statistics Department, Stanford University Collaboration with Peter P Lee from Stanfords Hematology Department Elizabeth Purdom, Statistics, Stanford. Wor
Berkeley - BIRS - 04
Finding anomalously expressed genes in the brain tissue of Alzheimer patientsAlan Hubbard, Simon Melov, David Bennet, Mary Lopez1 2 3 1 UC Berkeley, SPH2 3 44Buck Institute Rush University Medical CenterPerkinElmerAcknowledgements Contrib
Berkeley - BIRS - 04
Multiple Testing Methods For ChIP-Chip High Density Oligonucleotide Array DataS nd z Kele u u sDepartment of Statistics and of Biostatistics & Medical InformaticsUniversity of Wisconsin, MadisonBIRS Workshop, Statistical Science for Genome Bio
Berkeley - BIRS - 04
A Deletion/Substitution/Addition Algorithm for Optimization of Neural Network ArchitectureBlythe Durbin Division of Biostatistics, UC Berkeley jointly with Sandrine Dudoit and Mark van der LaanBIRS Workshop Statistical Science for Genome Biology A
Berkeley - BIRS - 04
Multiple Hypothesis Testing for High Dimensional Biological DataKatherine S. Pollard Center for Biomolecular Science & Engineering University of California, Santa CruzPage 1High Dimensional Biological DataAdvances in technology allow us to coll
Berkeley - BIRS - 04
Improving the Reliability of Results from Genome-Wide StudiesShelley B. Bull, Samuel Lunenfeld Research Institute, and Dept of Public Health Sciences, University of Toronto Joint work with Lei Sun, Dept of Public Health Sciences, and Long Yang Wu, L
Berkeley - BIRS - 04
The D/S/A Algorithm with Polynomial Basis FunctionsSandra E. SinisiDivision of Biostatistics, UC Berkeley ssinisi@stat.berkeley.edu Primary Reference: http:/www.bepress.com/sagmb/vol3/iss1/art18 Technical Reports: http:/www.bepress.com/ucbbiostat
Berkeley - PH - 296
Inferring Protein Interactions From Phylogenetic Distance MatricesGertz, J. et al. Bioinformatics, 2003, 19 (16): 2039-2045Peter Dimitrovdimitrov@stat.berkeley.eduInferring Protein Interactions From Phylogenetic Distance Matrices p.1/16Outlin
Berkeley - PH - 292
Database mining with biomaRtSteffen DurinckLawrence Berkeley National Laboratory and Division of Biostatistics, UC BerkeleyStatistics and Genomics seminar August 2007Overview The BioMart software suite biomaRt package for R Workshop style bi
Berkeley - PH - 296
1 The Affymetrix platform for gene expression analysis Affymetrix recommended QA procedures The RMA model for probe intensity data Application of the fitted RMA model to quality assessment23Probes are 25-mers selected from a target mRNA se
Berkeley - MATH - 16
016A Homework 6 SolutionJae-young Park October 6, 2008 2.1 *4 Which functions have the property that the slope always decreases as x increases? Solution (a), (e). You can nd these answers by nding the graphs which is convave down everywhere. For (
Berkeley - MATH - 128
Math 128a - Homework 2 - Due Feb 14 at the beginning of class 1) Complete Question 4 from Homework 1, which was postponed due to delayed availability of computer accounts. 2) In this question we will write a program to explore the sensitivity of root
Berkeley - CS - 267
CS 267 Applications of Parallel Computers Lecture 9: Split-C James Demmelhttp:/www.cs.berkeley.edu/~demmel/cs267_Spr99CS267 L9 Split-C Programming.1Demmel Sp 1999Comparison of Programming Models Data Parallel (HPF) Good for regular applicat
Berkeley - MATH - 128
Math 128a - Program 1 - Due March 14 Your assignment is to implement a program which computes and plots a curve in the x, y plane, dened as the solution of a implicit equation f (x, y) = 0. Your inputs will be 1. A function that evaluates f (x, y), f
Berkeley - MATH - 16
Solutions prepared by Danielle Champney, ddchamp@berkeley.edu Sections 102 and 110 Homework 4 Solutions Section 1.4: 18, 22, 36, 48, 52 18. lim 22. lim 2 1 1 ( + 1) = lim = lim + 1 = 2 1 1 1 1 1 2 10 2( 5) 2 1 = lim = lim = 2 25 5 5 5
Berkeley - MATH - 16
Problem 2.3.6 1 Solution: f (x) = 4x2 1 = (2x 1)(2x + 1) = 0 x = 1 , 2 . f is positive 2 1 1 1 on (, 2 ) ( 1 , ) and negative on ( 1 , 1 ). So ( 2 , f ( 2 ) = 8 ) is the 2 22 3 1 relative maximum and ( 2 , f ( 1 ) = 4 ) is the relative minimum.