As seen in
Save 20% or More on Tuition
Making smarter decisions about the courses you take, and performing better in those courses will save you thousands of dollars.
Study Smarter, Score Higher
Join
Course Hero
Access
best resources
Ace
your classes
Ace your courses with Course Hero!
|
|
...482: Engl Writing Technologies mon/wed 10-10:50 engl bldg 108 fri 10-10:50 in engl bldg 304 instructor: spencer schaffner, assistant professor email: spencers@uiuc.edu im: metaspencer web: metaspencer.com office hours: mon 1-2 / wed 3-4 (engl bldg 300) This course has two main elements: The first involves our efforts to uncover, explore, analyze, and understand a wide range of writing technologies. This will involve some historical work, personal experimentation, and social research. The goal of...
|
Study Smarter, Score Higher
- Access Tutors on Course Hero On Demand 24/7
- Access Premium Study Materials
Here are the top 5 related documents
...Resumes
A presentation brought to you by the Purdue University Writing Lab
Agenda
Resume Description General Guidelines Preliminary Research Sections Extra Tips Cover Letter Workshop
What is a Resume?
Personal summary of your professional h...
...Writing Scientific Abstracts
Abstract: What is the Purpose?
Scientific abstracts
introduce journal articles inform readers about articles content help readers decide whether or not to read article overview conference programs, abstract collecti...
...Email Etiquette for Professors
Why is Email Etiquette Important?
Audiences interact with the printed word as though it has a personality and that personality makes positive and negative impressions upon us. Without immediate feedback, your documen...
...Teaching Writing to Science Undergraduates
A Workshop for Instructors of Introductory Science Courses
Why Focus on Writing in an Introductory Science Course?
Undergraduates in introductory courses sometimes lack basic writing skills: Grammatical kn...
Here are the top 5 documents for ENGL 482
...Research on the Typewriter
The typewriter is often maligned, called obsolete or oldschool, and thought of as a dead writing tool. In this project, you will collaboratively work to recover the various histories of the typewriter while exploring how th...
...Invent Your Own Typeface
Typefaces are generally thought of as lists of "fonts" we select from and use. As Ellen Lupton shows, in Thinking With Type, each typeface has a history, designers, and specific purposes. You job in this assignment is to crea...
...writing on clay assignment
adapted from Dennis Baron's "Writing on Clay" assignment, online at https:/netfiles.uiuc. edu/debaron/www/482/essay_ 2.htm
This project has three parts and is meant to dialogue with your reading and understanding of Dennis...
...final project on UIUC virtual writing communities
In your early projects for this class, there was an emphasis on where technologically embodied writing happens on campus. Chalkboards, sidewalks, and notebooks all exist in physical space and can be ...
...Campus Handwriting
This assignment is one of the projects linked to the Ethnography of the University (EOTU) project. The goals are for you to both document and study different technologically mediated forms of handwriting on campus. Possible Handwr...
Document Excerpt (unformatted)
Course Hero has millions of student submitted documents similar to the one
below including study guides, homework solutions, papers, exam answer keys and textbook solutions.
...482: Engl Writing Technologies mon/wed 10-10:50 engl bldg 108 fri 10-10:50 in engl bldg 304 instructor: spencer schaffner, assistant professor email: spencers@uiuc.edu im: metaspencer web: metaspencer.com office hours: mon 1-2 / wed 3-4 (engl bldg 300) This course has two main elements: The first involves our efforts to uncover, explore, analyze, and understand a wide range of writing technologies. This will involve some historical work, personal experimentation, and social research. The goal of this first element will be to understand all writing as connected to technologies of production, display, and distribution. The second element of the class involves learning a newer writing technology: the coding and design web documents using html, css, and javascript. No previous experience designing and coding websites is required; students with advanced coding skills are still encouraged to enroll. 1 2 Visit the course website http://www.english.uiuc.edu/Schaffner/teaching/fall2006/482 to view all assignments for the course, the course policies, and download revised copies of this syllabus. Most readings and links are bundled under "482" at the right-hand side of the page at http://del.icio.us/metaspencer Required Text and Materials: 1 book: Ellen Lupton's Thinking with Type: A Critical Guide for Designers, Writers, Editors, & Students. 1 USB flashdrive (512mb or more recommended) 2 accounts: http://del.icio.us & https://netfiles.uiuc.edu Grade Distribution 20% of your grade: participation and discussion This portion of your grade is based on your contributions to class discussion, active maintenance of a del.icio.us account, collaboration with other students on group projects and efforts, regular and consistent participation (first 2 missed days excused; additional days missed = 2% off final grade). 80% of your grade: writing and projects 20% 10% 10% 10% 10% 10% 10% reading response papers (graded - + and averaged together; lowest dropped) writing on clay project campus handwriting project (EUTO) typewriting research project (EOTU) design your own typeface project major site revision project on campus online writing (EOTU) Policies: Policies in this course regarding diversity, academic integrity, late work, participation, missed classes, and much more can be found by clicking on "policies" from the course website or going directly to http://www.english.uiuc.edu/Schaffner/teaching/policies.html You are responsible for familiarizing yourself with these stated policies and responding with a quick email letting me know that you have read them. Please see me immediately if you have any trouble fulfilling your obligations in this course. Course Calendar If a reading is listed as available at "/history.482.," locate it at http://del.icio.us/metaspencer/ history.482. Please print readings (when possible and manageable) and bring the paper version(s) with you to class. Week 1: Introductions Wed Aug 23 Friday Aug 25 introductions; overview of the course assignment given: set up your del.icio.us and netfiles.uiuc.edu accounts for Friday meet in the computer lab today (EB 304) overview of our web work the basic architecture of the web, how it works, how we'll be using it explanation of scripting software, how it works, how it differs from what we'll be doing the dynamics of code and display working with directories organizing your directories in /482 organizing your bookmarks on del.icio.us due today: email spencers@uiuc.edu with your netfiles and del.icio.us account names. They should read "https://netfiles.uiuc.edu/NETID/482 and http://del.icio.us/USERNAME Week 2: Writing on Clay Mon Aug 28 read for today: Dennis Baron's "From Pencils to Pixels: The Stages of Literacy Technology" (/history.482) due today: reading response paper for "From Pencils to Pixels" (bring paper copy to class and store .doc on your flash drive); see reading-response assignment sheet for details assigned today: "writing on clay" project and website due today: parts 1 and 2 of "writing on clay" assignment Wed Aug 30 Friday Sept 1 meet in the computer lab today (EB 304) introduction to html resizing your images (if necessary) two part structure of an html web page (head and body) the fundamental parts of a page (html, head, body) index pages /images folders how tags control text and objects basic tags to know online resources for coding in html controlling text with inline tags (font, size, color, attributes) links Due by the end of class: a simple index.html page in /482 with growing list of assignments by due date (most recent at top) Week 3: Handwriting, Pens, and Pencils Mon Sept 4 Wed Sept 6 no class -- Labor Day due today: part 3 of "writing on clay" assignment come to class prepared to discuss your project read for today: Wilson, Shari "The Surprising Process of Writing" and comments from readers at the bottom of the page (/handwriting.482) read for today: Eugene Hsu's homepage (/handwriting.482) assignment given: "campus handwriting" (EOTU) due today: handwritten reading response paper to Wilson's article (bring paper copy to class and store digital .jpg or .gif on your flash drive) meet in the computer lab today (EB 304) introduction to html continued different kinds of links (internal; external; same page targets) images (hosted, resized, "stolen" bandwidth) embedded objects of other kinds (vids, sounds, gifs) background colors background sounds redirects iframes and the architecture of syndication Friday Sept 8 Week 4: Handwriting, Pens, and Pencils cont. Mon Sept 11 read for today: Daniel Chandler's "The Phenomenology of Writing By Hand" (/handwriting.482) read for today: Susan Snyder's "Penmanship: A lost pursuit for st...
Find millions of documents here - Study Guides, Homework Solutions, Papers, Exam Answer Keys and more.
Course Hero has millions of course related materials that will enable you to learn better,
faster and get an A in all your courses.
Below is a small sample set of documents:
Below is a small sample set of documents:
University of Illinois, Urbana Champaign >> ENGL >> 582 (Fall, 2009)
Genre Theory Engl 582: Topics in Research and Writing Center for Writing Studies UIUC Spencer Schaffner, Asst. Professor spencers@uiuc.edu im: \"metaspencer\" office hours mon/wed 1:00-2:00 and by appointment course website: http:/www.english.uiuc....
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
Research on the Typewriter The typewriter is often maligned, called obsolete or oldschool, and thought of as a dead writing tool. In this project, you will collaboratively work to recover the various histories of the typewriter while exploring how th...
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
Invent Your Own Typeface Typefaces are generally thought of as lists of \"fonts\" we select from and use. As Ellen Lupton shows, in Thinking With Type, each typeface has a history, designers, and specific purposes. You job in this assignment is to crea...
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
writing on clay assignment adapted from Dennis Baron\'s \"Writing on Clay\" assignment, online at https:/netfiles.uiuc. edu/debaron/www/482/essay_ 2.htm This project has three parts and is meant to dialogue with your reading and understanding of Dennis...
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
final project on UIUC virtual writing communities In your early projects for this class, there was an emphasis on where technologically embodied writing happens on campus. Chalkboards, sidewalks, and notebooks all exist in physical space and can be ...
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
Campus Handwriting This assignment is one of the projects linked to the Ethnography of the University (EOTU) project. The goals are for you to both document and study different technologically mediated forms of handwriting on campus. Possible Handwr...
University of Illinois, Urbana Champaign >> ENGL >> 482 (Fall, 2009)
Major Website Revision Project Select one of the first two web sites you made for this class (clay or handwriting) and give it thorough overhaul. You should look to the earlier site as content that you will arrange, display, and add to in new ways. ...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 4 Long Annotation #2: Tate, Rupiper, Schick Due Dates: Tobin chapter, Monday, Feb. 13, before class, electronic submission Burnham, Wednesday, Feb. 15, before class, electronic submission Covino, Monday, Feb. 20, before class, e...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 7 Five-Paragraph Essay (or essays) on the Five-Paragraph Essay Due Dates: Monday, April 3 Rough Draft Monday, April 3 Peer Review Session Monday, April 7 Final Draft Due (& previous drafts) Length: Roughly 5-8 pages. Double sp...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 1 Group Film Clip Presentation and Handout; Individual Short Paper Due Dates: Friday, February 3rd, Group 1 (Eat, Drink, Man, Woman) Friday, February 24th, Group 2 (Strictly Ballroom) Monday, March 13th, Group 3 (Rivers and Tide...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 10 Composition Theory and Practice Final Project Due Dates: Wednesday, November 16th Proposal Due Friday, December 9th Completed Project Due Proposal: 1-2 pages typed, single spaced, sketches and/or storyboarding for visual as...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 5 Composition Pedagogy Manifesto Due Dates: proposal due March 8th, before class via electronic submission manifesto due March 17th, by 5:00 via electronic submission Length: proposal = 1 page, single spaced (describe your plan)...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 9 Long Annotation #3: Lambert Stock Due Dates: pp. 1-50, Monday, April 17, before class, electronic submission pp. 21-103, Wednesday, April 19, before class, electronic submission Friday, April 21, in class, hard copy (full anno...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 8 Short Annotation #3: Russell Due Date: Wenesday, April 12, In Class Format: One page, single spaced In the context of this course, the purposes of an annotation are multiple: to be descriptive enough so as to stand in for...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 6 Short Annotation #2: Wiley, Wesley, Williams Due Date: Wednesday, March 29th, hard copy in class Format: One page, single spaced In the context of this course, the purposes of an annotation are multiple: to be descriptive...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 10 Composition Theory and Practice Final Project Due Dates: Monday, April 24 Proposal Due (electronic submission before class) Wednesday, May 3 Completed Project Due (by 5:00 pm) Proposal: 1 page typed, single spaced, sketches...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 3 Long Annotation #1: Sirc Due Dates: pp. 1-32, Monday, Jan. 30th, before class, electronic submission pp. 33-67, Wednesday, Feb. 1, before class, electronic submission pp. 69-119, Monday, Feb. 6, before class, electronic submis...
University of Illinois, Urbana Champaign >> ENGL >> 481 (Fall, 2009)
engl 481 assignment 2 Short Annotation #1: Lutz and Deemer Due Date: Friday, January 27th, In Class Format: One page, single spaced In the context of this course, the purposes of an annotation are multiple: to be descriptive enough so as to st...
Cincinnati >> LESSON >> 8 (Fall, 2009)
C+ Programming Applied to Robotics, Mark Aull Lesson 8: Laser Measurement System lab activity The Sick Laser Measurement System is a method of detecting obstacles. It can operate in a few different operating modes, but I\'ve always run it at the 1 ang...
Cincinnati >> LESSON >> 1 (Fall, 2009)
C+ Programming Applied to Robotics, Mark Aull Lesson 1: Intro to Visual Studio, C+ file types C+ uses several file types. Source code, the human readable or high level language, is stored primarily in .cpp files, but also .h files. .cpp files contain...
Cincinnati >> EH >> 3 (Fall, 2009)
Users Manual for the gimmR (Gaussian Infinite Mixture Model in R) package Support web page: http:/eh3.uc.edu/gimm Outline 1. 2. 3. 4. 5. 6. Introduction Using the package Formatting data for simple model Analyzing data with replicates Using Context-...
Cincinnati >> EH >> 3 (Fall, 2009)
Users Manual for the gimmR (Gaussian Infinite Mixture Model in R) package Outline 1. 2. 3. 4. 5. Introduction Using the package Formatting data for simple model Analyzing data with replicates Using Context-Specific Infinite Mixture Model (CSIMM) 1. ...
Cincinnati >> EH >> 3 (Fall, 2009)
Users Manual for the gimmR package (Gaussian Innite Mixture Model in R) Mario Medvedovic, Vinayak Kumar September 28, 2006 1 Introduction This package serves as the interface between the low level procedures for clustering gene expression data usi...
Cincinnati >> EH >> 3 (Fall, 2009)
Examples of using gimmR package (Gaussian Innite Mixture Model in R) Mario Medvedovic, Vinayak Kumar September 29, 2006 1 Introduction gimmR serves as the interface for running low level procedures for clustering gene expression data using the Bay...
Cincinnati >> EH >> 3 (Fall, 2009)
...
Cincinnati >> EH >> 3 (Fall, 2009)
q 120 q q q q 80 100 q q 60 q 40 q q q q q q q q q q 0 20 eu c1 cn mb sb c19 ...
Cincinnati >> EH >> 3 (Fall, 2009)
CLUSTERING MULTINOMIAL OBSERVATIONS VIA FINITE AND INFINITE MIXTURE MODELS AND MCMC ALGORITHMS Mario Medvedovic, University of Cincinnati Medical Center Mario Medvedovic, Department of Environmental Health, University of Cincinnati Medical Center, 3...
Cincinnati >> EH >> 3 (Fall, 2009)
DNA Microarrays and Computational Analysis of DNA Microarray Data in Cancer Research Mario Medvedovic, Jonathan Wiest 1. 2. 3. Introduction Applications of microarrays Analysis of gene expression microarrays a. Data normalization b. Detecting differe...
Cincinnati >> EH >> 3 (Fall, 2009)
Principal Investigator/Program Director (Last, First, Middle): BIOGRAPHICAL SKETCH Provide the following information for the key personnel and other significant contributors in the order listed on Form Page 2. Follow this format for each person. DO ...
Cincinnati >> EH >> 3 (Fall, 2009)
Breast Cancer Genomics Informatics http:/eh3.uc.edu/BreastCancer Kaustubh Shinde1, Xiangdong Liu1,2, Maureen Sartor1, Prachi Kothiyal2, Mario Medvedovic1,2 1Department 2Division of Environmental Health, University of Cincinnati, 3223 Eden Avenue ML ...
Cincinnati >> EH >> 3 (Fall, 2009)
Original Papers LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data Maureen A Sartor1, George D. Leikauf2 and Mario Medvedovic3,4* 1 2 Center for Computational Medicine and Biology, University o...
Cincinnati >> EH >> 3 (Fall, 2009)
Supplemental Information Bayesian context-specific infinite mixture model for clustering of gene expression profiles across diverse microarray datasets Xiangdong Liu, Siva Sivaganesan, Ka Yee Yeung, Junhai Guo, Roger Bumgarner, Mario Medvedovic* *Mar...
Cincinnati >> EH >> 3 (Fall, 2009)
Clustering Mutational Spectra via Classi cation Likelihood and Markov Chain Monte Carlo Algorithms Mario MEDVEDOVIC, Paul SUCCOP, Rakesh SHUKLA, and Kathleen DIXON We have analyzed a set of 39 mutational spectra of the supF gene that were generated b...
Cincinnati >> EH >> 3 (Fall, 2009)
Gene Expression Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset Liu, X.1,2, Sivaganesan, S.3, Yeung, K.Y.4, Guo, J.1, Bumgarner, R.E.4, MedvedovicMario1,2* Department of Environmental Heal...
Cincinnati >> EH >> 3 (Fall, 2009)
14 12 q q q q q q expns[controls, 1] q q 10 q q q q q q q q q q q q q q q q q q q q 6 8 2 4 6 8 Index 10 12 14 ...
Cincinnati >> EH >> 3 (Fall, 2009)
N_noninf = 100, sd = 0.7 1.0 True Positive Rate 0.2 0.4 0.6 0.8 contextselection Euclidean distance Pearson correlation 0.0 0.00 0.01 0.02 0.03 0.04 0.05 False Positive Rate N_noninf = 50, sd = 0.7 1.0 True Positive Rate 0.2 0.4 0.6 0.8 cont...
Cincinnati >> EH >> 3 (Fall, 2009)
Before subtracting batch effect 0 1 2 3 4 Br Control E2 ICI Before subtracting batch effect 1.5 0.0 0.5 1.0 Br Control E2 ICI After subtracting batch effect 4 0 1 2 3 Br Control E2 ICI After subtracting batch effect 1.5 0.0 0.5 1....
Cincinnati >> EH >> 3 (Fall, 2009)
sd = 0.3 1.0 True Positive Rate 0.2 0.4 0.6 0.8 contextselection Euclidean distance Pearson correlation 0.0 0.00 0.01 0.02 0.03 0.04 0.05 False Positive Rate sd = 0.4 1.0 True Positive Rate 0.2 0.4 0.6 0.8 contextselection Euclidean distance...
Cincinnati >> EH >> 3 (Fall, 2009)
0 10 20 30 40 50 Br_3 Control_2 Control_1 Control_3 Control_4 ICI_2 ICI_4 ICI_1 Br_2 Br_1 Br_4 ICI_3 E2_3 E2_2 E2_1 E2_4 ...
Cincinnati >> EH >> 3 (Fall, 2009)
0.0 0.5 1.0 1.5 sample LFF1121.CEL HFS862 AIN1147.CEL LFF808.CEL LFS3780.CEL HFF848 LFF854 HFS1107.CEL LFO1106.CEL HFS861 FO1146.CEL LFO817.CEL HFS860 LFO319 HFF302 LFF3560.CEL HFS374.CEL LFO368.CEL LFS864 HFS322 LFS326 LFB3370 LFF853 LFF851 HFB...
Cincinnati >> EH >> 3 (Fall, 2009)
Color Key 2 1 0 1 2 Row ZScore 5947_at 80176_at 220323_at 79827_at 1440_at 2744_at 6280_at 5266_at 7075_at 27286_at 4318_at 23136_at 26353_at 2633_at 5698_at 3569_at 57722_at 344887_at 6318_at 10950_at 624_at 339479_at 5793_at 1645_at 23648_at ...
Cincinnati >> EH >> 3 (Fall, 2009)
N_noninf = 100, sd = 0.3 1.0 True Positive Rate 0.2 0.4 0.6 0.8 contextselection Euclidean distance Pearson correlation 0.0 0.00 0.01 0.02 0.03 0.04 0.05 False Positive Rate N_noninf = 100, sd = 0.4 1.0 True Positive Rate 0.2 0.4 0.6 0.8 con...
Cincinnati >> EH >> 12 (Fall, 2009)
Height 0.7 SAHA02.CEL Control5A1.CEL Control5A.CEL HDAC4204.CEL MS27501.CEL MS27501.CEL HDAC4204.CEL Control5A.CEL SAHA02.CEL Control5A1.CEL MS27501.CEL Control5A1.CEL Control5A.CEL SAHA02.CEL HDAC4204.CEL 0.8 1.05 Height Height Height 0.7 SAHA02....
Cincinnati >> EH >> 3 (Fall, 2009)
7632LP 5622LP 6631LP 8641LP 2591LP 11522LP 1531LP 9511LP 10521LP 13651LP 16R672 L 4612LP 3592LP 12711LP 14652LP 15662LP LP1A.CEL LP1A.CEL LP1A.CEL LP1A.CEL LP1A.CEL LP2A.CEL LP1.CEL LP2A.CEL LP2A.CEL LP2A.CEL LP2A.CEL LP1A.CEL LP1A.CEL...
Cincinnati >> EH >> 3 (Fall, 2009)
Fcnb 5 0 1 2 3 4 1 Control 2 E2 3 ICI 4 Br Slfn3 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Pde6h 0 1 2 3 4 1 Control 2 E2 3 ICI 4 Br Pkia 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br Ap2m1 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br ...
Cincinnati >> EH >> 3 (Fall, 2009)
Rab3d 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Trpm4 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Hprt 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Il6ra 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Il11ra1 0 1 2 3 4 5 6 7 1 Control ...
Cincinnati >> EH >> 3 (Fall, 2009)
Chrd 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Nov 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br ...
Cincinnati >> EH >> 3 (Fall, 2009)
Ar 0 2 4 6 8 1 Control 2 E2 3 ICI Kcnmb1 0 1 2 3 4 5 1 Control 2 E2 3 ICI Hoxd10_predicted 0 2 4 6 8 1 Control 2 E2 3 ICI RGD1305645_predicted 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI ...
Cincinnati >> EH >> 3 (Fall, 2009)
Me1 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Chm 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Hspa4l_predicted 6 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br Tmeff1 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br ...
Cincinnati >> EH >> 3 (Fall, 2009)
Vtn 6 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br RGD1305928_predicted 0 1 2 3 4 1 Control 2 E2 3 ICI 4 Br Clca3_predicted 0 2 4 6 8 10 12 1 Control 2 E2 3 ICI 4 Br ...
Cincinnati >> EH >> 11 (Fall, 2009)
LN25 10 8 6 4 2 Percent of Total 0 CS92 10 8 6 4 2 0 2 0 2 4 smoothed reporter level [log2] ...
Cincinnati >> EH >> 3 (Fall, 2009)
LN25 10 8 6 4 2 Percent of Total 0 CS92 10 8 6 4 2 0 2 0 2 4 smoothed reporter level [log2] ...
Cincinnati >> EH >> 3 (Fall, 2009)
Examples of using gimmR package (Gaussian Innite Mixture Model in R) Mario Medvedovic, Vinayak Kumar November 22, 2006 1 Introduction gimmR serves as the interface for running low level procedures for clustering gene expression data using the Baye...
Cincinnati >> EH >> 3 (Fall, 2009)
Users Manual for the gimmR package (Gaussian Innite Mixture Model in R) Mario Medvedovic, Vinayak Kumar September 7, 2006 1 Introduction This package serves as the interface between the low level procedures for clustering gene expression data usin...
Cincinnati >> EH >> 3 (Fall, 2009)
0 5 10 15 20 25 64679_at 292746_at 679942_at 360914_at 81506_at 303817_at 64455_at 305846_at 81526_at 298077_at 311803_at 300455_at 303772_at 85496_at 114851_at 498736_at 304785_at 286922_at 292485_at 312192_at 308836_at 25098_at 613220_at 2426...
Cincinnati >> EH >> 3 (Fall, 2009)
Color Key and Histogram 2000 Count 0 0.4 500 1000 1500 0 0.2 0.4 Value myeloid leukemia fac similar tomotifconta myosin, myozenin polypep similar to Calseques1 tripartite C type 2 typ myosin, light1, polyp hemochromatosis(fa troponin heavy s...
Cincinnati >> EH >> 3 (Fall, 2009)
Color Key and Histogram 2500 Count 0 0.4 500 1500 0 0.2 0.4 Value hypothetical component malic enzyme member 6 complement protein LOC ELOVL family 1 comple retroviral RIKEN origin expressed Mphaseintegration site phosphoprotein exonuclease 1 ...
Cincinnati >> EH >> 3 (Fall, 2009)
# genes with correct GO annotation 10 1e33 1e26 1e19 1e12 1e05 FDR threshold 20 50 100 200 500 1000 ...
Cincinnati >> EH >> 3 (Fall, 2009)
Before removing Batch Effect 0.0 log(sd) 1.5 1.0 0.5 AIN HFB HFF HFO HFS LFB LFF LFO LFS 3.0 2 2.5 2.0 4 6 8 mean 10 12 14 After removing Batch Effect 0.0 log(sd) 1.5 1.0 0.5 AIN HFB HFF HFO HFS LFB LFF LFO LFS 3.0 2 2.5 2.0 4 6 8 m...
Cincinnati >> EH >> 3 (Fall, 2009)
rocTop100GenesUp$tpr 0.0 0.0 0.2 0.4 0.6 0.8 1.0 0.2 0.4 0.6 0.8 1.0 rocTop100GenesUp$fpr ...
Cincinnati >> EH >> 3 (Fall, 2009)
Rab3d 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Trpm4 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Hprt 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Il6ra 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Il11ra1 0 1 2 3 4 5 6 7 1 Control ...
Cincinnati >> EH >> 3 (Fall, 2009)
Cxcl2 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Aps 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br Slfn3 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Ccl28 5 0 1 2 3 4 1 Control 2 E2 3 ICI 4 Br Nfil3 0 2 4 6 1 Control 2 E2 3 ICI 4 Br ...
Cincinnati >> EH >> 3 (Fall, 2009)
Me1 8 0 2 4 6 1 Control 2 E2 3 ICI Chm 0 2 4 6 8 1 Control 2 E2 3 ICI Peci 0 2 4 6 8 1 Control 2 E2 3 ICI Hspa4l_predicted 6 0 1 2 3 4 5 1 Control 2 E2 3 ICI RGD1559882_predicted 6 0 1 2 3 4 5 1 Control 2 E2 3 ICI Sncaip...
Cincinnati >> EH >> 3 (Fall, 2009)
Rab3d 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Trpm4 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Hprt 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Il6ra 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Il11ra1 0 1 2 3 4 5 6 7 1 Control ...
Cincinnati >> EH >> 3 (Fall, 2009)
Cxcl2 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Aps 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br Slfn3 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Casp4 0 1 2 3 4 5 6 7 1 Control 2 E2 3 ICI 4 Br Timp1 10 0 2 4 6 8 1 Control 2 E2 ...
Cincinnati >> EH >> 3 (Fall, 2009)
Ppp1r14a 7 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Fmo2 7 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Impa2 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Arl4a 0 1 2 3 4 5 6 7 1 Control 2 E2 3 ICI 4 Br Col7a1_predicted 6 0 1 2 3 4 5 ...
Cincinnati >> EH >> 3 (Fall, 2009)
Cxcl2 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Aps 0 1 2 3 4 5 1 Control 2 E2 3 ICI 4 Br Casp4 0 1 2 3 4 5 6 7 1 Control 2 E2 3 ICI 4 Br Timp1 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br S100a8 0 2 4 6 8 1 Control ...
Cincinnati >> EH >> 3 (Fall, 2009)
Zdhhc2 7 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Abca3 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br RGD1560559_predicted 10 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Fuk_predicted 7 0 1 2 3 4 5 6 1 Control 2 E2 3 ICI 4 Br Sema4a 10 0 2 4 6 ...
Cincinnati >> EH >> 3 (Fall, 2009)
Prss8 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br Krt28 0 2 4 6 8 10 1 Control 2 E2 3 ICI 4 Br Slc18a1 0 1 2 3 4 5 6 7 1 Control 2 E2 3 ICI 4 Br Pkig 0 2 4 6 8 1 Control 2 E2 3 ICI 4 Br Psen1 0 2 4 6 1 Control 2 E...
Cincinnati >> EH >> 3 (Fall, 2009)
Atp6v1b2 0 2 4 6 8 10 1 Control 2 E2 3 ICI 4 Br RGD1562168_predicted 8 0 2 4 6 1 Control 2 E2 3 ICI 4 Br ...
