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Caltech - EE - 243
EE243 Quantum Electronics SeminarQuickTime and a BMP decompressor are needed to see this picture.Topics in Terahertz OpticsRobb Walters Thomas J. Watson Laboratory of Applied Physics California Institute of TechnologyTerahertz Frequencies f
Caltech - ETD - 01302007
viContentsAcknowledgements Abstract 1 Introduction 2 Apparatus 2.1 2.2 2.3 2.4 2.5 2.6 UHV chamber system . . . . . . . . . . . . . . . . . . . . . . . . . . . Electron gun system . . . . . . . . . . . . . . . . . . . . . . . . . . . Imaging syste
Caltech - ETD - 05292007
CHAPTER 4 Tryptophan fluorescence quenching by brominated lipids1024.1 INTRODUCTION The structure and dynamics of biological macromolecules have been widely studied with fluorescence quenching. The accessibility of tryptophan in proteins, and thu
Caltech - ETD - 01122009
1Chapter 1Vesicle Reconstitution & Characterization of the Synthetic Mechanosensitive Channel of Large Conductance21.1IntroductionMechanosensation is used in all three kingdoms of life for various functions. Inbacteria, mechanosensation i
Caltech - ETD - 05292007
LIST OF FIGURES Figure 2.1. Schematic of the two-stage model proposed for general folding of -helical bundles (top) and the concerted model for the folding of -barrels into the lipid bilayer. Figure 2.2. Schematic illustrating the general cell envelo
Caltech - ETD - 01302007
51Chapter 4 Studies of Single-Crystal Surfaces with Small Adsorbates The UEC experiments for surface studies were first demonstrated on semiconductor surfaces, such as silicon and GaAs. They are ideal systems because the surfaces can be relatively
Caltech - ETD - 11032007
Studies of Two Dimensional Electron Systems via Surface Acoustic Waves and Nuclear Magnetic Resonance TechniquesA Thesis by Lisa A. TracyIn Partial Fulfillment of the Requirements for the Degree of Doctor of PhilosophyCalifornia Institute of Te
Caltech - ETD - 05292007
CHAPTER 5 Investigations of the C-terminal domain on the refolding of OmpA tryptophan mutants using steady-state fluorescence and circular dichroism spectroscopyAcknowledgement: Some experiments were done in collaboration with Dr. Judy E. Kim.121
Caltech - ETD - 06012005
1Thesis: IntroductionThe focus of my thesis is the development and implementation of structure prediction methods (MembStruk) for a class of integral membrane proteins called the Gprotein-coupled receptors (GPCRs). MembStruk involves several steps
Caltech - ETD - 01302007
94Chapter 6 Fatty Acid and Phospholipid Crystalline Adsorbates: Ultrafast T-jump DynamicsTo study the dynamics of the surface adsorbates of crystalline fatty acids and phospholipids, the diffraction patterns were followed as a function of time aft
Caltech - ETD - 01302007
70Chapter 5 Fatty Acid and Phospholipid Crystalline Adsorbates: Steady State Studies To study the structural dynamics of molecular adsorbates on the surfaces, we used the Langmuir-Blodgett (LB) films. The LB technique was first introduced by Irvin
Caltech - ETD - 05292007
CHAPTER 2 Preparation of OmpA proteins and phospholipid vesiclesAcknowledgement Experiments were done in collaboration with Dr. Judy E. Kim. Dr. Kim initially expressed and purified wild-type, W7, W15, W57, W102, and W143 OmpA proteins. The protoco
Caltech - ETD - 12122004
IntroductionGeorge Shapovalov1- 2MS channels of bacteriaMechanosensitive (MS) ion channels commonly play a role as transducers, converting mechanical stimuli into electrical or chemical signaling, thus allowing the cell to regulate its behavio
Caltech - ETD - 01302007
117Chapter 7 ConclusionThe advance of experimental techniques contribute significantly to the research of physics. In the study of ultrafast dynamics, laser spectroscopy has pushed the time resolution to femtosecond and attosecond. By using the fe
Caltech - BI - 150
Transm r Re ase itte leFromMondays Le cture :1. Che ical transm m ission occurs whe transm r is re ase froma pre n itte le d synaptic te inal and rm binds to a ligand-gate channe on thepostsynaptic te inal. d l rm 2. Ope ning of theligand-gate chan
Caltech - BI - 170
Electron crystallography and single particle analysisFundamental challenges in biological EM Preserving native structure within microscope Obtaining 3D information from projections Dose limitationsBaumeister et al., Trends in Cell Biology 9:81
Caltech - BI - 170
Microscopy:5 lectures and homeworks, 2 chapters, 2 eld trips Electron microscopy EM basics and sample preparation Electron crystallography and single particle analysis Electron tomography and the future of EM Light microscopy non-uorescent:
Caltech - BI - 170
Lecture #1: Some miscellany Mass spectrometry Circular dichroism Surface plasmon resonanceMass spectrometrySlides taken from1. Wikipedia http:/en.wikipedia.org/wiki/Mass_spechttp:/en.wikipedia.org/wiki/Chemical_ionizationhttp:/en.wikipedi
Caltech - BI - 170
Problem Set 4BMB/Bi/Ch 170A Fall, 2008 Due 11/25/2008There are four problems in this section. You may use any books, problem sets, internet resources, or computer programs to solve these problems. If you get some ideas from a specific paper or web
Caltech - BI - 170
Final BMB 170a - Part 2 Problem 1. Alkaline phosphatase (30 points).1 of 41. Alkaline phosphatase (AP) catalyzes the hydrolysis of alkyl and arylphosphates (eq 1; R denotes alkyl substitutions) using an active site serine as a covalent nucleophil
Caltech - BI - 170
BMB170aLecture6 NucleicAcids,Oct16,2008 Newproblemsetisonline BasiccomponentsofNucleicAcids DNAstructure SecondarystructurepredicCon RNAstructure NucleicAcidDatabase Bermanetal(1992)"TheNucleicAcidDatabase:A ComprehensiveRelaConalDatabaseofTh
Caltech - BI - 170
Basic Introduction into Kinetic Modeling With Berkeley Madonna There are two easy ways to construct a model in Berkeley Madonna: 1. Using a set of formulas 2. Using the flowchart editor to create a visual model The first option is easier and faster,
Caltech - BI - 170
ProblemSet1Supplement 1. Proteinstructurebasics(10points)ProteinDataBank(PDB)andPymol a. LocalPDBtheentirePDBcanbeaccessedlocallyonthecomputers in31Braun.ItcanbefoundondriveP:onwindowsor/pdbon Linux. b. PDBadvancedsearching i. Gotothepdbwebsite(www.p
Caltech - BI - 170
BMB 170ALecture 151. How to Achieve Specicity: Binding energy, Editing mechanisms, and Kinetic Proofreading 2. Catalytic Promiscuity and the Evolution of New EnzymesMyth 1. Specicity is Determined by A Few Local InteractionsConvert Trypsin to
Caltech - BI - 170
Problem Set 3: Glycosylation and Introduction to Enzymes BMB/Bi/Ch 170a 2008 Due 11/11/2008 Download BMB170a_2008_Prob3.zip from the course website. This contains all the PDB files referenced in this pro
Caltech - BI - 170
BMB 170A Lecture 14 The Intrinsic Binding Energy and the Circe EffectHow to Account for Enzymes' Enormous Rate Enhancement?Enzyme Sweet potato !-amylase Orotidine decarboxylase Fumarase Mandelate racemase Staphylococcal nuclease Carboxypeptidase B
Caltech - BI - 170
Final BMB 170a, 2008 - Part 1 1 of 2 Each section is worth 10 points 1. Proteins a) Explain the kind of secondary structure, or lack thereof, you would predict based on the following three sequences i. KLTVRLNISVE, ii. TVSKITNDLNELADTI and iii. ACYNC
Caltech - BI - 170
Final BMB 170a - Part 1 Each section is worth 10 points 1. Proteins1 of 2a) Explain the kind of secondary structure, or lack thereof, you would predict based on the following three sequences i. KLTVRLNISVE, ii. TVSKITNDLNELADTI and iii. ACYNCGQP
Caltech - BI - 170
ProblemSet2:MoreProteins(andNucleicAcids) BMB/Bi/Ch170a2008 Due10/28/2008 1. DNAbindingproteins(25points) a. DownloadthestructuredofEgr1(EarlyGrowthResponseProtein1) (PDBID:1AAY).Drawatopologydiagramoftheprotein,howmany zincfingersarepresent? b.
Caltech - BI - 170
ProblemSet2:MoreProteins(andNucleicAcids) BMB/Bi/Ch170a2008 Due10/28/2008 1. DNAbindingproteins a. Therearethreezincfingers. b. Tetrahedralcoordinationgeometryofthezincatom. c. Residueshighlightedinredareresponsibleforsequencespecific bind
Idaho - AGECON - 416
Project Evaluation Lecture 1TotalCostFunctionforaProductionSystemExhibiting TotalCostFunctionforaProductionSystemExhibiting IIncreasing,ThenDecreasing,ReturnstoScale Increasing,ThenDecreasing,ReturnstoScale ncreasing,ThenDecreasing,ReturnstoScaleT
Caltech - E - 105
Community-Driven Rural Development What Have We Learned?Tom Dahl-stergaard David Moore Vanessa Ramirez Mark Wenner Ane BondeInter-American Development BankWashington, D. C.Sustainable Development Department Technical Papers SeriesCataloging-
Minnesota - KATSI - 001
DIANE KATSIAFICAS 801 Washington Ave. North #121, Minneapolis, MN 55401 Tel: 001-612-659-0781 Fax: 001-612-625-7881 PO Box 6784 19009 Rafina, Greece Tel/Fax 22940- 76684 e mail: katsi001@umn.edu selected work can be viewed at http:/www.umn.edu/~katsi
Caltech - CS - 134
Introduction to Objective CamlJason HickeyDRAFT. DO NOT REDISTRIBUTE.Copyright Jason Hickey, 2008. This book has been submitted for publication by Cambridge University Press. This draft may be used until the time the book appears in print. Janua
Caltech - CS - 219
Ph/CS 219, Winter 2005 Quantum Computation Prof. Alexei KitaevProblem set #1 Due Monday, January 31, 20051. (10 points) Let Uf be the quantum oracle corresponding to the function f : {1, . . . , N } {0, 1}, i.e., Uf |x = (1)f (x) |x . (1) We sta
Caltech - CS - 171
Triangle RasterizationKeegan McAllister October 23, 20071Barycentric coordinatesConsider a 2D triangle with vertices p0 , p1 , p2 R2 . Let x R2 be any point in the plane. We can always nd , , R such that x = p0 + p1 + p2 where + + = 1.
Caltech - CS - 171
RasterizationArray of pixels3 2 1 0 0 1 2 3 4CS174 Fall 99 Lecture 3Copyright Mark MeyerRasterizing LinesGiven two endpoints, ( x 0, y 0 ), ( x1, y1) find the pixels that make up the line.CS174 Fall 99 Lecture 3Copyright Mark Meyer1
Caltech - CS - 171
Rotations about an arbitrary axisRotate by ! around a unit axisrr!CS174 Fall 99 Lecture 2Copyright Mark MeyerRotations about an arbitrary axisRotation is linearrot (a + b) = rot ( a) + rot (b) rot (" a ) = " rot ( a) rot (b) a+b aCS
Caltech - CS - 219
Ph/CS 219, Fall 2003 Quantum Computation Prof. Alexei KitaevProblem set #3 Due Wednesday, November 24, 20041. Positivity vs. complete positivity (10 points) This problem has been moved from the previous set to the current one. Let T : L(C2 ) L(C
Caltech - CS - 151
CS151 Complexity TheoryLecture 2 April 2, 2009Interlude In an ideal world, given language L state an algorithm deciding L prove that no algorithm does better we are pretty good at part 1 we are currently completely helpless when it comes to
Caltech - CS - 151
CS151 Complexity TheoryLecture 5 April 14, 2009Nondeterministic space Robust nondeterministic space classes: NL = NSPACE(log n)k kNPSPACE = NSPACE(n )April 14, 2009 2Second startling theorem Strongly believe NP coNP seems impossible to
Caltech - CS - 151
CS151 Complexity TheoryLecture 4 April 9, 2009Ladner's Theorem Assuming P NP, what does the world (inside NP) look like?NP:NPCNP:NPCPPApril 9, 20092Ladner's TheoremTheorem (Ladner): If P NP, then there exists L NP that is neith
Caltech - CS - 284
The Sthreads Reference Manual Version 1.0 for ANSI CJohn Thornley Computer Science Dept. California Institute of Technology Pasadena, California INCOMPLETE DRAFT VERSION 19 April, 2009Contents1. Introduction..3 2. Overview..3 3. Errors.3 3.1 Erro
Caltech - CS - 284
1997-98CS 284aHomework Six: Multithreaded All-Pairs Shortest-Paths RevisitedHanded out: Tuesday, 19th November 1997. Due in: 9:00am, Wednesday, 3rd December 1997. IntroductionIn Homework Four, you solved the All-Pairs Shortest Paths problem usi
Caltech - CS - 284
1997-98CS 284aHomework Four: Multithreaded All-Pairs Shortest-PathsHanded out: Wednesday, 5th November 1997. Due in: 9:00am, Monday, 17th November 1997. IntroductionThere are two parts to this homework, each worth 10 points. Part 1 is to time t
Caltech - CS - 284
1997-98CS 284aHomework One: Multithreaded QuicksortHanded out: Wednesday, 15th October 1997. Due in: Friday, 24th October 1997. IntroductionStarting with the program provided, use the sthread_block() function to develop a correct and efficient
Caltech - CS - 284
1997-98CS 284aHomework Three: Parallel Sorting by Regular SamplingHanded out: Wednesday, 29th October 1997. Due in: 5:00pm, Friday, 7th November 1997. IntroductionStarting with the program provided, use Sthreads to develop an efficient multithr
Caltech - CS - 284
1997-98CS 284aHomework Five: Multithreaded Stream MergesortHanded out: Friday, 14th November 1997. Due in: 9:00am, Monday, 24th November 1997. IntroductionThere are two parts to this homework, the first worth 5 points and the second worth 15 po
Caltech - CS - 284
1997-98CS 284aHomework Two: Multithreaded Matrix MultiplicationHanded out: Wednesday, 22nd October 1997. Due in: 5:00pm, Friday, 31st October 1997. IntroductionStarting with the program provided, use the sthread_regular_for_loop() function to d
Caltech - PH - 223
Ph 223a, Fall 2008 Advanced Condensed Matter Physics Prof. Alexei Kitaev 1.1 Second quantization.Problem set #1 Due Monday, October 27, 2008a) Prove the lemma mentioned in class: If | is an N-particle state, then 1 Xk | = ak | , N where Xk = k|
Caltech - CS - 101
CSEC101b1/27/05N people to fund a project Examples Set up a web-business Create a shared facility: lab, computer, router,. The model I = 1, , N ui (y) - pi , u concave, y 0 pi = C(y), C convexWhat is Optimal? Max ui (y)- pi Subject
Caltech - CS - 101
CS/Ec 101 b1/25/05Strategic Form Game Players: i = 1, , N Strategies: si Si for each i Payoffs: ui(s1, ,sN) for each i Nash Equilibrium:s* S1 x x SN ui(s*) ui(s*/si) for each i. (s*/si) = (s*1, , si,s*N)Next An example using Nash
Caltech - PH - 223
Ph 223a, Fall 2008 Advanced Condensed Matter Physics Prof. Alexei KitaevProblem set #2 Due November 26, 20082.1 Friedel oscillations. Calculate the extra electron density n(r) around a resonant impurity with the local state at the Fermi level (d
Caltech - CS - 177
Lecture 1 Discrete CurvesCS177 (2008) - Discrete Differential Geometry1Warmup: Smooth SettingUnivariate curvesCS177 (2008) - Discrete Differential Geometry2Warmup: Smooth SettingUnivariate curvessecant tangentCS177 (2008) - Discrete Di
Caltech - CS - 101
CALIFORNIA INSTITUTE OF TECHNOLOGYSelected Topics in Computer Science and Economics CS/EC/101bK. Mani Chandy, John Ledyard Winter 2005Homework Set #5 Issued: 24 Feb 05 Due: BEFORE CLASS 03 Mar 051. You are shown three closed rooms. Two of the
Caltech - CS - 101
CS101, Ec 101Special topics in Computer Science. Selected topics in Economics Instructors:John Ledyard, Economics Mani Chandy, Computer Science Guest lecturersTime/place : Tuesday, Thursday 9 10:30, Jrg 74CS 101, Ec 101Introduction 5 January
Caltech - CS - 177
Motivation Variational Time Integrators:the geometry of dynamicsTime integration is essential! Needs to be:efficient stable physical@ B. Thomaszewski @ N. Threy@ A. Angelidis@ N. Chentanez @ N. GaloppoCS177: Discrete Differential Geometry:
Caltech - CS - 177
Invariant Measures (Definitely No Derivatives this Time!)Mathieu Desbrun & Peter SchrderCS177 (2008) - Discrete Differential Geometry1Last TimeOn this show.lots of derivatives tedious expressions in coordinatesFor what?only to discover that
Caltech - CS - 171
AnimationModifying scene parameters as a function of time 3) Scripting 5) Keyframing 7) Inverse Kinematics 9) Behavioral Animation 11)DynamicsCS171 Fall 00 Lecture 11 Copyright Mark MeyerScriptingSpecifying the parameters at every framedefine