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lecture notes-microbiology-2-Procaryotes

Course: CHE 461, Fall 2009
School: Air Force Academy
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of Classification Cellular Organism (according to cell structure) Cellular Organism Have nuclear membrane and membrane bound organells? Yes No not free-living organisms Eucaryotes Procaryotes: bacteria Virus Protists: Fungi, Algae, protozoa Plant: seed plants, mosses Animal: vertabrates and invertabrates Eubacteria: Gram-positive bacteria Gram-negative bacteria Non-gram bacteria: Actinomycetes Cynaobacteria...

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of Classification Cellular Organism (according to cell structure) Cellular Organism Have nuclear membrane and membrane bound organells? Yes No not free-living organisms Eucaryotes Procaryotes: bacteria Virus Protists: Fungi, Algae, protozoa Plant: seed plants, mosses Animal: vertabrates and invertabrates Eubacteria: Gram-positive bacteria Gram-negative bacteria Non-gram bacteria: Actinomycetes Cynaobacteria Archaebacteria: methanogen Halogen Thermoacidophiles Classification of Cellular Organism (according to cell structure) Cellular Organism Have nuclear membrane and membrane bound organells? Yes No not free-living organisms Eucaryotes Procaryotes: bacteria Virus Protists: Fungi, Algae, protozoa Plant: seed plants, ferns, mosses Animal: vertabrates and invertabrates Eubacteria: Gram-positive bacteria Gram-negative bacteria Non-gram bacteria Actinomycetes Cynaobacteria Archaebateria: methanogen Halogen Thermoacidophiles Procaryote Procaryotes have no membrane around the cell genetic information and no membrane-bound organelles Bacteria: E. Coli, Rhodospirillum sp. Size: 0.5-3m. Grow rapidly, double times: 0.5 hour and several hours. Utilize carbon sources: carbohydrates, hydrocarbon, protein and CO2. Picture courtesy of http://micro.magnet.fsu.edu/cells/procaryotes/images/procaryote.jpg Procaryote Cell Structure Nuclear region There is no membrane around the nuclear region containing genetic materials such as chromosomes and DNA (deoxyribonucleic acid). Chromosomes: A chromosome is, a very long, continuous piece of DNA, which contains many genes, regulatory elements and other intervening nucleotide sequences. The DNA which carries genetic information in biological cells is normally packaged in the chromosomes. http://micro.magnet.fsu.edu/cells/procaryotes/images/procaryote.jpg Procaryote Cell Structure Cytoplasm In cytoplasm, there are some visible structures: - ribosomes: sites of protein synthesis, 10,000 per cell, 10 -20 nm, 63% RNA and 37% protein. - storage granules: source of key metabolites, containing polysaccharides, lipids and sulfur granules. Sizes vary between 0.5-1 m. - Plasmids: DNA molecules separate from the chromosomal DNA and capable of autonomous replication. Usually occur in bacteria. e.g E.coli Application in Genetic Engineering. http://micro.magnet.fsu.edu/cells/procaryotes/images/procaryote.jpg Procaryote Cell Structure Cytoplasmic membrane - The cytoplasm is surrounded by a membrane called cytoplasmic membrane. - The cytoplasmic membrane contains 50% protein, 30% lipids and 20% carbohydrates. http://micro.magnet.fsu.edu/cells/procaryotes/images/procaryote.jpg Procaryote Cell Structure Cell wall - Eubacteria cell walls contain lipids & peptidoglycan which is a complex polysaccharide with amino acids and forms a structure somewhat like chain-link fence. - Archaebacteria walls cell do not have peptidoglycan. Outer membrane: Some bacteria (gram negative cells) have. - To retain important cellular compounds and - To exclude undesirable compounds in the environment. http://micro.magnet.fsu.edu/cells/procaryotes/images/procaryote.jpg Procaryote Cell Structure Capsule: Extracellular products can adhere to or become incorporated within the surface of the cell. Certain cells have a coating outside the cell wall called capsule. It contains polysaccharides or polypeptide and forms biofilm response to environmental challenges. Flagellum: is for cell motion. Pilus (Pili, pl.) A pilus is a hairlike structure on the surface of a cell. Pili enable the transfer of plasmids between the bacteria. An exchanged plasmid can add new functions to a bacterium, e.g., an antibiotic resistance. Procaryotes Procaryotes include - Eubacteria - Archaebacteria Eubacteria Cell chemistry of eubacteria is similar to eucaryotes. Classification Gram stain: Hans Christian Gram in 1884 developed the technique of gram stain which has been used to classify the eubacteria. Gram staining procedure: Fixing the cells by heating Dye with crystal violet stain purple Iodine and ethanol are added a. Gram-negative: The cells are colorless after Gram staining procedure. Gram-negative organisms will be counterstained with safranin and appear red or pink. Such cells have outer membrane supported by peptidoglycan e.g. E. coli. b. Gram-positive: the cells remain purple after gram staining and counterstaining procedures. Such cells have no outer membrane but with a rigid cell wall and thick peptidoglycan layer, e.g. B. subtilis. Eubacteria Other types of eubacteria: Non gram bacteria: some bac...

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Air Force Academy - CHE - 461
EucaryotesEucaryotes true nucleus, and organelles. andEucaryotes include fungi (yeast and molds), algae, protozoa, and animal and plant cells. Eucaryotic cells are than procaryotic cells in diameter. Yeast is about 5 -10 m, animal 10 m and plant 2
Air Force Academy - CHE - 461
EucaryotesEucaryotes have nuclear membrane and true nucleus, and membrane-bound organelles.Eucaryotes include fungi (yeast and molds), algae, protozoa, and animal and plant cells. Eucaryotic cells are five to ten times larger than procaryotic cells
Air Force Academy - CHE - 461
Eucaryotes- Fungi: yeast and mold - AlgaeEucaryotesFungi Fungi are which need to take nutrients from the environment for living. They are larger than bacteria.FungiTwo major groups are yeast and mold.YeastYeasts are very important economi
Air Force Academy - CHE - 461
Eucaryotes-FungiMoldsMolds are structure. and have a mycelialMycelium is highly branched system of tubes that contains mobile cytoplasm with many nuclei. Hypha is long, thin filaments on the mycelium.Mold Molds are very important economically:
Air Force Academy - CHE - 461
Analysis of Biological SystemDespite of all their complexity, an understanding of biological system can be simplified by analyzing the system at several different levels: the cell level: microbiology, cell biology; the molecular level: biochemistr
Air Force Academy - CHE - 461
Analysis of Biological SystemDespite of all their complexity, an understanding of biological system can be simplified by analyzing the system at several different levels: Cell level: microbiology, cell biology; Molecular level: biochemistry, molec
Air Force Academy - CHE - 461
CarbohydratesCarbohydrates are synthesized from carbon dioxide and water through photosynthesis, (CH2O)n, or Cn(H2O)n-1. Carbohydrates play critical roles as compounds in cells. Carbohydrates are classified by the number of sugar units andCarboh
Air Force Academy - CHE - 461
CarbohydratesCarbohydrates are synthesized from carbon dioxide and water through photosynthesis, (CH2O)n, or Cn(H2O)n-1. Carbohydrates play critical roles as storage and structural compounds in cells. Carbohydrates are classified by the number of
Air Force Academy - CHE - 461
LipidsLipids are energy storage in cell membrane and regulators of cell metabolism. Lipids are biological compounds that are insoluble in water, but soluble in nonpolar solvent such as benze, chloroform and ether. They are present in the nonaqueou
Air Force Academy - CHE - 461
LipidsLipids are energy storage in cell membrane and regulators of cell metabolism. Lipids are hydrophobic biological compounds that are insoluble in water, but soluble in nonpolar solvent such as benze, chloroform and ether. They are present in t
Air Force Academy - CHE - 461
Nucleic Acids - RNA and DNANucleic acid is a complex, high-molecular-weight biochemical macromolecule composed of nucleotide chains that convey genetic information. The most common nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (
Air Force Academy - CHE - 461
Cell NutrientsNutrients required by cells can be classified in two categories: 10-4 M. C, N, O, H, S, P, Mg 2+, and K+. are needed in concentrations larger than-10-4 M. Mo, Zn, Cu, Mn, Ca, Na, vitamins, growth hormones and metabolic precursors.
Air Force Academy - CHE - 461
Cell NutrientsNutrients required by cells can be classified in two categories: - Macronutrients are needed in concentrations larger than 10-4 M. C, N, O, H, S, P, Mg 2+, and K+. - Micronutrients are needed in concentrations less than 10-4 M. Mo, Zn,
Air Force Academy - CHE - 461
Outline of EnzymesIntroduction - Features of enzyme catalysis Enzyme kinetics - Models for enzyme kinetics - Effect of pH and Temperature Immobilized Enzyme System - Method of immobilization - Diffusional limitations Medical and Industrial Utilizati
Air Force Academy - CHE - 461
Outline of EnzymesIntroduction - Features of enzyme catalysis Enzyme kinetics - Models for enzyme kinetics - Effect of pH and Temperature Immobilized Enzyme System - Method of immobilization - Diffusional limitations Medical and Industrial Utilizati
Air Force Academy - CHE - 461
Enzyme KineticsEnzyme Kinetics: Study the rate of enzyme catalyzed reactions. - Models for enzyme kinetics - Michaelis-Menten kinetics - Inhibition kinetics - Effect of pH and TemperatureEnzyme KineticsMichaelis-Menten kinetics or saturation kine
Air Force Academy - CHE - 461
Substrate Concernation versus Time25 Substrate Concentration (M) 20 15 10 5 005101520253035Time (min)Substrate Concernation versus Time25 Substrate Concentration (M) 20 15 10 5 005101520253035Time (min)Use in
Air Force Academy - CHE - 461
Glucoamylase Activity DeterminationEx. One unit of activity of glucoamylase is defined as the amount of enzyme which produces 1 mol of glucose per min in a 4 % solution of Lintner starch at pH4.5 and at 60oC. To measure the amount of glucoamylase in
Air Force Academy - CHE - 461
Example: During a test kinetics of enzyme-catalyzed reaction, the following data E0 (g/l)T(oC) I (mmol/ml) V (mmol/mi-min) S(mmol/ml) 0.92 30 0 0.1 1.64 0.92 30 0 0.02 0.9 0.92 30 0 0.01 0.58 0.92 30 0.6 0.1 1.33 0.92 30 0.6 0.03 0.8 0.92 30 0.6 0.02
Air Force Academy - CHE - 461
Factors Affecting Enzyme Kinetics pH effects - on enzymes - enzymes have ionic groups on their active sites. - Variation of pH changes the ionic form of the active sites. - pH changes the three-Dimensional structure of enzymes. - on substrate - some
Air Force Academy - CHE - 461
Immobilized Enzyme SystemsEnzyme Immobilization: To restrict enzyme mobility in a fixed space.Immobilized Enzyme SystemsEnzyme Immobilization:- Easy separation from reaction mixture, providing the ability to control reaction times and minimize t
Air Force Academy - CHE - 461
Immobilized Enzyme SystemsEnzyme Immobilization: To restrict enzyme mobility in a fixed space.Immobilized Enzyme SystemsEnzyme Immobilization:- Easy separation from reaction mixture, providing the ability to control reaction times and minimize t
Air Force Academy - CHE - 461
Industrial Production and Utilization of EnzymesCost of PurificationThe effect of number of steps on the yield and costs in a typical enzyme purification process. For example,Step Specific activity Unit/mg 1 1 2 3 4 5 3 9 27 81 243 Cost per weigh
Air Force Academy - CHE - 461
Basics of Molecular BiologyCentral Dogma: - DNA replication - Transcription - Translation Metabolic regulation: - Genetic level - Metabolic pathway control - Cell receptorCentral DogmaCentral Dogma: universal molecule. is stored on the DNA: The
Air Force Academy - CHE - 461
Basics of Molecular BiologyCentral Dogma: - DNA replication - Transcription - Translation Metabolic regulation: - Genetic level - Metabolic pathway control - Cell receptorCentral DogmaCentral Dogma: universal - Genetic information is stored on th
Air Force Academy - CHE - 461
Metabolic Regulation. : - Enzyme activity - Cell surface receptorsMetabolic RegulationGenetic Level Regulation: Control which protein is synthesized through adjusting the rate of transcription of that gene: Feedback repression: The of enzymatic a
Air Force Academy - CHE - 461
Metabolic Regulation- Genetic level - Cellular level: - Enzyme activity - Cell surface receptorsMetabolic RegulationGenetic Level Regulation: Control which protein is synthesized through adjusting the rate of transcription of that gene: Feedback
Air Force Academy - CHE - 461
Metabolic Pathways- Overview of metabolism pathways - Catabolism - Anabolism - Bioenergetics - Important metabolic pathways - Catabolism: - Glucose catabolism - aerobic pathway - anaerobic pathway - Hydrocarbon - Nitrogen compounds - Anabolism: - Ph
Air Force Academy - CHE - 461
Cell Growth Kinetics- Introduction - Growth patterns and kinetics in batch culture - growth phases - effect of factors: oxygen supply - heat generation - Growth kinetics (Monod Equation) - Growth in continuous culture (ideal chemostat)Growth Kinet
Air Force Academy - CHE - 461
Cell Growth Kinetics- Introduction - Growth patterns and kinetics in batch culture - growth phases - effect of factors: oxygen supply - heat generation - Growth kinetics (Monod Equation) - Growth in continuous culture (ideal chemostat)Growth Kinet
Air Force Academy - CHE - 461
Batch Growth KineticsEffect of factors: aerobic growth is more efficient.- Dissolved oxygen (DO) - aerobic fermentation requires oxygen - oxygen gas is sparingly soluble in water - specific growth rate may be limited by DO if DO is below a critical
Air Force Academy - CHE - 461
Batch Growth KineticsEffect of factors: aerobic growth is more efficient.- Dissolved oxygen (DO) - aerobic fermentation requires oxygen - oxygen gas is sparingly soluble in water - specific growth rate may be limited by DO if DO is below a critical
Air Force Academy - CHE - 461
Quantifying Growth KineticsMonod equation: unstructured and nonsegregation model Unstructured model: assuming Applicable to balanced-growth condition: - exponential growth phase in batch culture - single-stage, steady state continuous culture - cel
Air Force Academy - CHE - 461
Quantifying Growth KineticsMonod equation: unstructured and nonsegregation model Unstructured model: assuming fixed cell composition. Applicable to balanced-growth condition: - exponential growth phase in batch culture - single-stage, steady state
Air Force Academy - CHE - 461
Cells Growth in Continuous CultureContinuous culture: fresh nutrient medium is continually supplied to a well-stirred culture and products and cells are simultaneously withdrawn. At steady state, concentrations of cells, products and substrates are
Air Force Academy - CHE - 461
Ideal ChemostatX0=0, kd=0, qp=0Um= D 0 0.03 0.05 0.08 0.1 0.13 0.15 0.18 0.19 0.19 S 0 0.03 0.07 0.12 0.2 0.33 0.6 1.4 3.8 4.8 0.2 hr-1 Ks 0.2 g/l Yx/s 0.41/D 1/S #DIV/0! #DIV/0! 40 35 20 15 13.33 8.33 10 5 8 3 6.67 1.67 5.71 0.71 5.26 0.26 5.21 0
Air Force Academy - CHE - 461
Ideal ChemostatX0=0, kd=0, qp=0Determine Ymax, Kd S0 D (h -1) 0.1 0.2 0.3 0.4 0.5 0.6 0.7 800 mg/L X0=0 Yx/s, max Y, app 1/Y, app 1/D 0.47 2.14 0.53 1.88 0.55 1.82 0.58 1.73 0.59 1.7 0.6 1.68 0.6 1.66 0.63S (mg/L) X (mg cells/L) 16.7 366 33.5 407
Air Force Academy - CHE - 461
Air Force Academy - CHE - 461
1. A 10-L medium containing a vitamin is to be sterilized. Assume that the number of spores initially present is 105/l. The values of the activation energy E0d for spores destruction and the pre-Arrhenius constant are E0d = 65 kcal/g-mol =1036 min-
Air Force Academy - CHE - 461
Air Force Academy - CHE - 461
Industrial Production of Citric AcidApplication of Citric Acid: - Acidulant in food, confectionary, and beverage (75%) - Pharmaceutical (10%), e.g. soluble aspirin preparation - industrial (15%): complexes with metals such as iron and copper to be s
Air Force Academy - ME - 335
ME 335 Fluid Mechanics II (January 2009)Department of Mechanical Engineering University of Saskatchewan Instructor David Sumner, Ph.D., P.Eng. Associate Professor Department of Mechanical EngineeringTelephone: E-Mail: Office:(306) 966-5537 david
Air Force Academy - CHE - 333
VISCOMETRYIntroduction This experiment involves the use of a cone and plate viscometer. You will be asked to characterize a fluid which may or may not be Newtonian. Newtonian fluids should be tested at different shear rates for a range of temperatur
Air Force Academy - CHE - 333
Natural Convection and RadiationIntroduction In this experiment heat is transmitted in parallel by two different mechanisms, free (or natural) convection and thermal radiation. We are able to distinguish between them because the rate of thermal radi
Air Force Academy - CHE - 333
ION EXCHANGE IN WATER SOFTENINGObjective: Determine the exchange capacity of a cationic resin in water softening. Introduction: Water softening is a process to reduce hardness in water and prevent the build-up of lime scale and calcium deposits in p
Air Force Academy - CHE - 333
APPENDIX1. Heat Transfer Review 2. Schematic diagram of Boiling Heat Transfer Unit: Armfield H655 3. Typical Data for Air/Water Double Pipe Heat Exchanger: Unicol 185/73 4. Shell and Tube Heat Exchanger Dimensions/Configurations 5. Flow diagram of W
Air Force Academy - CE - 468
Chapter 41LINERSCE 468 January, 2003Liners4.1 INTRODUCTION Waste Placement and Stabilization2Dry PlacementWet Placement1Liners10.1 INTRODUCTION3Liners10.2 OBJECTIVES42Liners4.3 SUBGRADE PREPARATIONIdeally, foundation lay
Air Force Academy - ME - 316
ME 3162008/2009 yearLecture note 1Lecture Note (1) Kinematics of a rigid bodyTable of contents: 1. Basic concepts 2. Classification of problems 3. The scope of problem solving using the equation in the GE226 course1. Basic conceptsWe begin
Air Force Academy - ME - 316
Figure 1But these moving coordinates are not shown on Figure 1 in order to avoid some visual difficulty.For the above two situations, we can also directly apply the equation of the angular acceleration for the three consecutive rotations, namely
Air Force Academy - ME - 316
ME 316Lecture note 4Lecture Note (4) Kinematics of Spatial Mechanisms (II)Please read this document together with "Lecture Note 4 Appendix"1. IntroductionOur previous discussion documented in Lecture Note 3 only concerned the spatial rotation
Air Force Academy - ME - 316
Appendix A for Lecture Note 4
Air Force Academy - ME - 316
ME 316Lecture note 5Lecture Note (5) Kinetics of Spatial Mechanisms: Inertia The objectivesReview the kinetics of planar mechanisms Discuss new things in the kinetics of spatial mechanismsKinetics ProblemsWhat is the cause for an object to mo
Air Force Academy - ME - 316
ME 316Lecture note 6Lecture Note (6): Kinetics of Spatial Mechanisms: Kinetics Equation ObjectivesKinetics equations Problem solving procedure Example analysisKinetics EquationWith respect to the center of gravity G of a body system, we have
Air Force Academy - ME - 316
ME 316 Dynamics and Vibration http:/engrwww.usask.ca/classes/ME/316/index.html Fall, 2008 Instructor: Prof. Chris W.J. Zhang Room 2B34 Phone: 966 5478 / Cell: 8804220 Chris.Zhang@Usask.Ca Office hours: Tuesday 11:30 1:00 Thursday 11:30 1:00 You can
Air Force Academy - ME - 316
Kinematic Analysis Equation1. General MotivationFor the problem as shown below, we need a new method.Type 5Type 4ME 316 handout 3 1Kinematic Analysis Equation2. PreliminaryProperty: If we haveA, A=constantthen we havedA = A dtAn
Air Force Academy - ME - 316
Spatial Motion: Kinematics Topics: Spatial motion and its construction Euler's theorem Equation for Euler's theoremME 316 Handout 41Spatial Motion: KinematicsA general spatial motion: a translation with a point + a rotation about a pointT
Air Force Academy - ME - 316
Kinematics of Spatial Mechanism: ClassificationTopics:Classification of problems through examplesME 316 Handout 51General equations:u r r drB / A VB = VA + u B / A + AB r B / A dta B =a A d 2 rB / A drB / A + u B / A +2AB uB/ A dt dt
Air Force Academy - ME - 316
Kinetics (I)1. Review of Kinetics of Planar Mechanisms - Inertia (mass and moment of inertia) - Governing equation (Newtons Law) 2. Moment/Product of Inertia spatial rotationME 316 Lecture 61Review of Planar Kinetics of a Rigid BodyKinetics:
Air Force Academy - ME - 316
Kinetics (II)1. Kinetics Equations 2. Classification of ProblemsME 316 Lecture 71Moment Equation for Rigid Body for Center of Gravity of the BodyZ G Y XForce equation F = maME 316 Lecture 7G2Moment Equation for Rigid Body for any fi