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LSU - BIOL - 2051
*Begin EXAM 2 * Macronutrients Elements required in fairly large amounts (Table 5.1- Macronutrients in nature and in culture media) o Carbon Need to make organic compounds such as amino acids, fatty acids, sugars, and nitrogenous bases Autotrophs Us
Cornell - BIO G - 101
Features Cnidaria HydraBody symmetry Radial SymmetryTissue Layers DIPLOblasticPlatyhelminthes Bilateral symmetry Planaria Nematoda Vinegar eels Rotifera Rotifers Mollusca Clam Squid Bilateral symmetry Bilateral symmetry Bilateral symmetryTRIP
LSU - BIOL - 2051
Exam 2 Chapter 6- Microbial Growth PART I Bacterial Cell Division 6.1 Cell Growth and Binary Fission, p. 136 Microbial growth involves an increase in the number of cells. In addition to understanding the basic science of microbial growth, there are m
Cornell - BIO G - 101
Katherine Roll Biology Lab 10/14/2005The Effect of Humidity on The Taxis of Armadillidium VulgareAbstract The isopod experiment, based on observations in nature, was designed to test whether isopods prefer a moist versus a dry living environment.
Cornell - BIO G - 101
1. A. Chemical work at the cellular level a. Creating (electro)chemical gradients i. Specific example: Oxidative Phosphorylation (during cellular respiration) 1. Electron Transport Chain a. "falling electron", -G b. Electron passed from one carrier t
LSU - BIOL - 2051
1 9-18 Ch. 6 Microbial Growth Bacterial Cell Division 6.1 Cell Growth and Binary Fission, p.136 Growth of most microorganisms occurs by the process of binary fission Fig. 6-1 1. DNA replication 2. Cell elongation 3. Septum formation - where the actua
Cornell - BIO G - 104
Katherine Roll Plant Biology 4/13/2006 It is advantageous for the root to grow and develop more rapidly than the shoot. The root anchors the shoot and provides water and nutrients for the shoot to grow. Roots with many root hairs have a greater absor
Cornell - HD - 250
Katherine Roll 3/15/06 "Walk the Line" and Family Life I chose to watch the movie "Walk the Line," which was released in 2005, because it is a musical biography of Johnny Cash and I enjoy listening to Johnny Cash's music. I would rate "Walk the Line"
LSU - BIOL - 2051
Exam 2 Methods to study microorganisms *Begin EXAM 2 * Macronutrients o Elements required in fairly large amounts (Table 5.1- Macronutrients in nature and in culture media) o Collection on required macromolecules o Carbon Need to make organic compoun
LSU - BIOL - 2051
Example in class: Time 1 hr 2 hr 3 hr 4 hr 5 hr 6 hr 7 hr 8 hr 9 hr 10 hr # of cells 1.6 x 107 2.2 x 107 3.1 x 107 4.3 x 107 6.0 x 107 8.3 x 107 1.3 x 108 1.6 x 108 2.2 x 108 3.0 x 108What is the generation time? 2 hr 5 minAnother example: Time 2
LSU - BIOL - 2051
Figures shown in lecture that are not in your textbookChemical antimicrobial agents used to control microorganisms that are harmful to humans:Sterilants;destroy all forms of microbial lifeDisinfectants kill microorganisms, but endospores are
LSU - BIOL - 2051
List of Figures for Exam 2 Methods to study microorganisms 5.1b iron-chelating siderophore, E. coli enterobactin 5.1c iron-chelating siderophore, aquachelin 5.3 aseptic technique 5.2a streak plate 5.2b isolated colonies (pure cultures) from the strea
LSU - BIOL - 2051
GC ratio% of guanine + cytosine in an organism's DNA > 5% difference in GC means the 2 organisms of are 2 different speciesDNA:DNA Hybridizationtests ability of denatured DNA in single strand form from 2 organisms to bond (anneal) to each other
LSU - BIOL - 2051
Diversity (Chapters 11) Early Life Planet Earth is at least 4 billion years old First evidence for microbial life can be found in rocks about 3.86 billion years old Stromatolites are fossilized microbial mats consisting of layers of filamentous proka
LSU - BIOL - 2051
Prokaryotic Diversity Bacteria (Chapter 12) Phylum 1: Proteobacteria all Gram negative metabolically diverse. Purple phototrophic bacteria Anoxygenic phototrophs Purple sulfur bacteria, Ex. Chromatium H2S as electron donor Form sulfur globules Found
LSU - BIOL - 2051
General Facts PROTEOBACTERIA anoxygenic phototrophPurple Phototropic BacteriaPurple sulfur bacteria Chromatium H2S as electron donar forms sulfur globules found in illuminated anoxic zones of lakesPurple non-sulfur bacteriaRhodobacter
LSU - BIOL - 2051
Diversity (Chapters 11) Early Life Planet Earth is at least _. First evidence for microbial life can be found in _. _ are fossilized microbial mats consisting of layers of filamentous prokaryotes and trapped sediment. The phototrophic green nonsulfur
LSU - BIOL - 2051
Prokaryotic DiversityBacteria (Chapter 12) Phylum 1: _ all Gram _; metabolically diverse.Purple phototrophic bacteria Anoxygenic phototrophs Purple sulfur bacteria, Ex. Chromatium _ as electron donor Form sulfur _ Found in _ zones of lakes Pur
LSU - BIOL - 2051
DNAProkaryoteNucleoid Circular chromosome Double stranded helix supercoiled by DNA gyrasesEukaryoteNucleus Linear chromosomes Double stranded helix wound around histones to form nucleosomeExtrachromosomal plasmids Transposable elementsPlasmi
LSU - BIOL - 2051
ArchaeaEuyarchaeotaCrenarchaeotananoarchaeotaextreme halophilesmethanogensthermoplasmataleshyperthermophilesferroglobushyperthermophilespsycrophilesthermophilesacidophilessulfolobuspyrolobus=-EukaryaProtozoaSlime m
LSU - BIOL - 2051
Enyme repression Occurs when sufficient product is present to synthesis of enzymes no longer needed (8-11) Arg operonNegative Control ProkaryotesEnzyme induction Occurs when substrate is present to make enzymes needed to use substrate Lac ope
LSU - BIOL - 2051
List of Figures for Exam 3 Genetics 7.4 structure of DNA 7.5 computer model of DNA 7.8d supercoiled chromosomal DNA in a prokaryote 7.9 DNA wound around histone proteins to form a nucleosome in a eukaryote 7.2a prokaryote gene structure - no introns,
LSU - BIOL - 2051
Chlorophylls/bacteriophyllscentral pigments of photosynthesis chlorophylls: oxygenic phoyosynthesis Bacteriochlorophylls: anoxygenic photosynthesis embedded in photosynthetic membrane absorb different wavelengths of lightPIGMENTS!caratenoids
Cornell - ORIE - 320
6 7 61 6 22 5 49Cij = cost (in $10 ) of locating fab i at site j.X11 X12 X13 X21 X22 X23 X31 X32 X33Xij = 1 if fab i is located at site j Xij = 0 if fab i is not located at site jOR&IE 320/520 Prof. Bland8/23/07minimize 6x11 + 1x12 +
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland8/23/07What follows is a progression of algebraic models for the brewery problem. The first model is very simple and natural. It corresponds directly to the AMPL model brewery1.txt. You should be able to see readily that
Cornell - ORIE - 320
OR 320/520 Optimization I Prof. Bland10/30/07Complementary Slacknesssee BHM section 4.5 Consider a standard form linear programming problem (P) and its dual (D): max cx min yb (P ) s.t. Ax b (D) s.t. yA c x0 y0 Assume that A is m n A pair of
LSU - BIOL - 2051
Metabolism- sum of al reactions both catabolic and anabolic Catabolic- energy producing Anabolic- biosynthetic (energy-using) Oxidation-Reduction reactions (Redox) o Oxidation- loss of electrons o Reduction- gains electrons o Redox reactions are coup
Cornell - ORIE - 320
ORIE 320 Professor Bland9/10/07Convexity, Polyhedra, Extreme Points A set S IRn is convex if for all points x1 , x2 S the point (1 - )x1 + x2 S, for all 0 1. Can you give a geometric interpretation of this property? Note that the intersecti
Cornell - ORIE - 320
OR 320/520 Optimization I Prof. Bland10/30/07Motivating Complementary SlacknessConsider the linear programming problem (P):maximize subject to6x1 + 14x2 + 13x3 + 30x41 2 x1+2x2 + 4x2 + 6x2 - 2x2 + x2 + 3x2 -x3 + 4x3 - 3x3 4x3 - x3 +
LSU - BIOL - 2051
MicroBiology Lab Midterm Experiment 1: Media Preparation and Sterilization Terms: 1. complex medium- composed of digests of chemically undefined substances such as yeast and meat extracts. 2. defined medium- one for which a precise chemical compositi
Cornell - ORIE - 320
OR320/520 Prof. Bland10/25/07These pages will be useful for the next 2 classes on duality. See also BHM Chapter 4 scetions 1-4.c1 y1 y2 y3 A1c2 A20 1 0 00 0 1 00 0 0 1y1 y2 y320 2 4 330 2 2 60 1 0 00 0 1 00 0 0 1Recall Par
Cornell - ORIE - 320
OR 320/520 Optimization I Prof. Bland10/18/07.Motivating Linear Programming Duality Consider the following variation on the brewery problem. We wish to maximize profit from the production of Ice Beer (product 1) and Malt Beer (product 2). Data on
Cornell - ORIE - 320
Suppose we are interested in an l.p. problem of the form: max c1x1 s.t. 2x1 4x1 3x1 x1 0, +c2x2 +c3x3 +c4x4 +c5x5 +2x2 +x3 = 80 +2x2 +x4 = 120 +6x2 +x5 = 210 x2 0 x3 0, x4 0 x5 0It is easy to check that the following two propoesd solutions are
Cornell - ORIE - 320
OR 320/520 Optimization I Professor Bland11/29/07Integer Linear Programming(see BHM Ch. 9, Sections 1, 3, 4, 5, 8)nMinimizej=1 ncj x j aij xj = bi (i = 1, . . . , m)j=1s.t. (ILP)xj 0 and integer (j = 1, . . . , n).(May maximize ra
Cornell - ORIE - 320
Phase Isystem The initial Simplex tableau is: x1 x2 x3 x4 x5 x6 x7 x8 rhs -1 1 1 1 0 0 1 0 100 0.9 0.3 -0.6 -1 -1 0 0 1 0 0.2 0.1 0 -0.3 0 1 0 0 0 -(-w) 0 0 0 0 0 0 1 1 0 To get a tableau w.r.t. B = (7,8,6) we need to subtract 1st 2 rows from (-w) r
Cornell - ORIE - 320
OR 320/520 Optimization I Prof. BlandFall 2007A manufacturer has 80 tons of natural beef, 120 tons of natural pork, and 210 tons of recycled magazines on hand for the production of "Grandma's All Natural Sausages" during the current period. There
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland9/20/07In upcoming lectures we will be examining several issues in sensitivity or postoptimality analysis, which concern how an optimal solution of a linear programing problem responds to a change in some entry in the inp
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland11/8/07maximize subject to:+9x4 +4x4 39 +4x4 79 12 21 4x3 +3x4 38 x3 +x4 10 x1 0, x2 0, x3 0, x4 0.4x1 1x1 2x1 x1 2x1+3x2 +3x2 +3x2 +x2 +x2+12x3 +2x3 +6x3
Cornell - ORIE - 320
Multidivisional problem with linking constraints:x1 x2 x3 x4 x5 x6 x7 x8 x9 x10 rhs -1 3 2 4 1 0 0 0 0 0 39 2 3 6 4 0 1 0 0 0 0 79 1 1 0 0 0 0 1 0 0 0 12 2 1 0 0 0 0 0 1 0 0 21 0 0 4 3 0 0 0 0 1 0 38 0 0 1 1 0 0 0 0 0 1 10 -4 3 12 9 0 0 0 0 0 0 0U
Cornell - ORIE - 320
ORIE 320/520 Optimization Professor Bland11/13/07Example of the Revised Simplex Method (with the explicit basis inverse)Maximize 4x1 +2x2 +x3 -2x4 s.t. x1 +x5 -x6 +x7 =1 +x9 =1 +x10 = 0+x3 +5x4 +3x5 +2x6 +2x7 +x8 x2 +x3 +4x4 +4x5 -x6 +x7 +x7
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland10/16/07Initialization of the Simplex Method: An Example Using Artificial Variablescf. BHM Chapter 2 sections 2,4,5.Recall (from Rec Exercise/Problem Set 4) the AluMinimum Corp. problem concerning the production of a l
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland10/30/07Revisiting Right-hand-side Parametrics from the Perspective of LP Duality: An Exercise1. Suppose that we have identified a dual feasible solution y for a linear programming problem maximize cx s.t. Ax b, x 0.
Cornell - ORIE - 320
OR 320/520 Optimization I Prof. Bland10/9/07Right-hand-side ParametricsWe will return to the sausage-making example and use it to illustrate parametric analysis of z (bi). In this example we take the first right-hand-side value b1 to be the par
LSU - BIOL - 2051
Test Three Sections 7.14-7.17 Protein synthesis Translation o Protein synthesis o mRNA is translated into protein o Key players: mRNA, tRNAs, and ribosomes REMEMBER Codons o mRNA sequence of three nucleotides o Start codon (AUG) - sequence at which t
LSU - BIOL - 2051
Rhinovirus upper respiratory infections common coldCoronavirus lower respiratory infections pneumoniaInfluenza virus respiratory infections fluAnimal virusesHerpes virus fever blisters chicken poxHuman Papilloma virus warts ca
LSU - BIOL - 2051
Rhinovirus upper respiratory infections common coldCoronavirus lower respiratory infections pneumoniaInfluenza virus respiratory infections fluAnimal virusesHerpes virus fever blisters chicken poxHuman Papilloma virus warts ca
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland10/1/07In the handout Marginal Values we began to explore issues of sensitivity/postoptimality analysis, including: adding a new variable, varying a right-hand-side coefficient. This handout will deal with several additio
Cornell - ORIE - 320
OR320/520 Prof. Bland The Simplex Method: Parts III and IV Part III: Tableaus9/18/07In our illustration of the simplex method in Part II on the example from Part I we used the term Tableau to describe a system of equations that gets updated at ea
Cornell - ORIE - 320
OR320/520 Prof. Bland The Simplex Method: Parts I and II9/13/07Part I: Standard Form Systems and Ordered Bases Let A be an m n matrix and let b be an m 1 vector. We will be interested in linear programming problems in which the constraints take
Cornell - ORIE - 320
OR 320/520 Optimization I Professor Bland11/013/07Sparsity and Packed StorageAssume we have an m n constraint matrix A, where m and n are large, but (the fraction of entries in A that are nonzero) is very small. Then rather than store A explic
Cornell - ORIE - 320
OR&IE 320/520 Prof. Bland10/11/07Balancing Return and Risk: A Simplified Example of Parametric Programmimg This problem is adapted from Bradley, Hax, and Magnanti. An investor has $5,000,000 and two potential investments. Let xj for j = 1, 2 deno
Cornell - ORIE - 320
OR 320/520 Optimization I 10/18/07. Prof. Bland Parts of this handout are adapted from notes of Prof. A.S. Lewis.The Transportation ProblemRead: Chapter 3 of the AMPL Book.Recall that at the beginning of the term we discussed examples of the Ass
Cornell - ORIE - 320
Counting Number of ways of picking n objects from a collection if N objects is N C n = Example: In poker, what is the probability of getting (a) A full-house (b) Three-of-a-kind (c) Two pairs a. b. c. = = = = = = =0.0475The sample space S of an exp
Cornell - ORIE - 320
EngrD270 Section 1 Dotplots and Stem-and-leaf are good for small or medium sets(usually up to 50) For Bigger ones, one usually uses boxplots or histograms Example As part of a quality control study aimed at improving a production line, the weights(in