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Indiana South Bend - C - 490
C490Spring 2009Programming Assignment #7Problem Description - Part 1: For the first part of this assignment you will be working on Exercise 19.14 on page #948 of the textbook. This will provide experience working with the Java HashMap and TreeSe
Washington - CS - 544
Cost Estimation For each plan considered, must estimate cost: Must estimate cost of each operation in plan tree. Depends on input cardinalities. Must estimate size of result for each operation in tree! Use information about the input relations.
Washington - CS - 544
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Washington - CS - 544
Datalog Inspired by the impedance mismatch in relational databases. Main expressive advantage: recursive queries. More convenient for analysis: papers look better. Without recursion but with negation it is equivalent in power to relational algebr
Washington - CS - 544
%!PS-Adobe-2.0 %DocumentFonts: Courier Times-Bold %Title: l9.ps (mpage) %Creator: mpage 2.4 September 1996 %CreationDate: Thu Apr 27 18:57:05 2000 %Orientation: Portrait %DocumentMedia: Letter 612 792 %BoundingBox: 18 18 594 774 %Pages: (atend) %EndC
Washington - CS - 544
%!PS-Adobe-3.0 %Title: Microsoft PowerPoint - aquv %Creator: Windows NT 4.0 %CreationDate: 8:25 5/3/2000 %Pages: (atend) %BoundingBox: 13 13 599 780 %LanguageLevel: 2 %DocumentNeededFonts: (atend) %DocumentSuppliedFonts: (atend) %EndComments %BeginPr
Indiana South Bend - C - 490
C490 Advanced JavaSet #1 January 12, 2009C490 Seminar in Computer Science: Advanced JavaInstructor: Dr. David R. SurmaAssociate Professor of Computer & Information SciencesIndiana University South BendMotivation for Studying Java Java has
Indiana South Bend - C - 490
Advanced JavaNotes - Set #2 January 2009Iteration a.k.a. "looping" Looping is controlled by while, do-while, and for statements while is the most general and is top-tested do-while resembles while but is bottom-tested for is generally used fo
Indiana South Bend - C - 490
Advanced JavaNotes Set #3 January 2009Review: Design issue from last time .Last time we looked at a "Coin" class and a "CountFlips" class. "Coin" objects were instantiated inside the main method located within the "CountFlips" class.Once instan
Indiana South Bend - C - 490
Advanced JavaNotes Set #4Built-in Vector classJava has a built-in class called Vector that is part of the java.util package.It provides a service similar to an array in that it can store a list of values and reference them by an index.However
Indiana South Bend - C - 490
Advanced Javanotes - set #5class Book{private String title; / instance variablepublic Book (String newTitle) / Constructor { title = newTitle; } public String toString () { return title; } }Start of public class Library{public static void
Indiana South Bend - C - 490
Advanced Javanotes set #6Java Packages - Overview Every class is part of some package All classes in a file are part of the same package {remember, we can put multiple classes in the same file} You can specify the package using a package decla
Indiana South Bend - C - 490
Advanced Javanotes set #7Returning to our discussion on inheritance and the "Horse" example.Motivation and Simple ExampleSuppose that you have a class Horse with the following methods: int age () String owner () double value () void birthday (
Indiana South Bend - C - 490
Advanced Javanotes set #8Briefly back to array of objects . . .Let's assume that you want to create an array of "Robot" objects. The number of robots in this case is fixed by the constant MAX_ROBOTS.Here is the Java code that can be used to acc
Washington - CS - 544
Answering Queries Using Views: The Last FrontierThe ProblemGiven a query Q and a set of view definitions V1,.,Vn: Is it possible to answer Q using only the V's? V1(A,B) :- cites(A,B), cites(B,A) V2(C,D) :- sameTopic(C,D), cites(C,C1), cites(D,D1)
Indiana South Bend - C - 490
Advanced Javanotes set #9Looking at an example program that uses an abstract class and that utilizes polymorphism.Abstract classesAn abstract classs purpose is to provide an appropriate superclass from which other classes can inherit and thus s
Indiana South Bend - C - 490
Advanced Javanotes - set #10Introduction to Exceptions. . . .Problems that arise in a Java program generate exceptions and errors. An exception is an OBJECT that defines an unusual or erroneous situation. An exception is thrown by a program or th
Indiana South Bend - C - 490
Advanced Javanotes - set #11Some odds & ins .The Comparable interface This interface is part of the Java standard class library. It contains only one method, compareTo, which takes an object as a parameter and returns an integer.int compareTo (O
Washington - CS - 544
Database System RecoveryCSE544Philip A. BernsteinCopyright 2000 Philip A. Bernstein5/1/001Outline1. Introduction 2. DB Recovery Model 3. Recovery Manager 4. Log-based Recovery 5. Media Failure 6. Shadow Paging5/1/0021. Introduction T
Indiana South Bend - C - 490
Advanced Javanotes - set #12Collections in JavaWe will now consider the Java collections framework, which gives the programmer access to prepackaged data structures as well as algorithms for manipulating those data structures. With collections, i
Indiana South Bend - C - 490
Advanced Javanotes - set #13Collection InterfaceSet Interface.List InterfaceLinkedListArrayListVectorNow let's look at an example that uses Linked Lists . . .The program will create two LinkedLists that each contain Strings.The ele
Washington - CS - 544
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Indiana South Bend - C - 490
Advanced Javanotes - set #14Enhanced for statementSince stepping through the elements of an array is such a common operation, Java has a way to do this without using a counter.The syntax is as follows:for (parameter : arrayName)statementwh
Washington - CS - 544
%!PS-Adobe-2.0 %Creator: dvips(k) 5.78 Copyright 1998 Radical Eye Software (www.radicaleye.com) %Title: sols.dvi %Pages: 3 %PageOrder: Ascend %BoundingBox: 0 0 612 792 %DocumentFonts: CMR17 CMR12 CMTT10 CMR10 %EndComments %DVIPSCommandLine: dvips -o
Washington - CS - 527
CSE 527Computational Biology Autumn 2003 Larry RuzzoHe who asks is a fool for five minutes, but he who does not ask remains a fool forever.- Chinese ProverbRelated Courses Genome 540/540 (Winter/Spring) Intro. To Comp. Mol. Bio. Genome 590
Washington - CS - 527
Talks today Dr. Phil Green , Professor of Genome Sciences, University of Washington "Finishing the Gene-ome: Computationally Directed Gene Structure Verification in C. elegans" 1:30 in Health Sciences K-069 Dr. Mark Chee , Vice President of Genomic
Washington - CS - 527
A Case Study - Chu et al.n nAn interesting early microarray paper My goalsn n nShow arrays used in a "real" experiment Show where computation is important Start looking at analysis techniques1The Transcriptional Program of Sporulation in Bu
Washington - CS - 527
www.cs.washington.edu/527Subscribe, if you Didn't get msg last nightClustering Expression Data Why cluster gene expression data? Tissue classification Find biologically related genes First step in inferring regulatory networks Look for comm
Washington - CS - 527
Cluster Validation for Gene Expression DataKa Yee Yeung 1 David R. Haynor 2 Walter L. Ruzzo 1Eisen's Cluster Software (PNAS 1998) Centroid-link hierarchical clustering algorithm Reorder for display Decide on your own cluster!GenesWhy Validat
Washington - CS - 527
Principal component analysis (PCA) for clustering gene expression dataKa Yee Yeung Walter L. Ruzzo Bioinformatics, v17 #9 (2001) pp 763-7741Outline of talk Background and motivation Design of our empirical study Results Summary and Conclusio
Washington - CS - 527
CSE 527CAST: a clustering method with a graph-theoretic basis Larry RuzzoTalks this week Today - Dr. Terry Hwa, Professor of Physics, UC San Diego "Complex Transcriptional Logics From Simple Molecular Interactions" 3:30, Hitchcock 132 Fri - Me,