34 Pages

Lecture 3 Guide

Course: BIS 98659, Summer 2009
School: UC Davis
Rating:
 
 
 
 
 

Word Count: 539

Document Preview

molecules DNA replicate to form identical chromatids Chromosomal DNA is wrapped around histones Stages of Mitosis Stages of Meiosis Synaptonemal complexes at meiosis MITOSIS Phase: Interphase diploid chromosomes decondensed DNA synthesis in S phase two copies of diploid chromosomes condense sister chromatids visible ----- * chromosomes line up on equator -----sister centromeres split chromatids move to...

Register Now

Unformatted Document Excerpt

Coursehero >> California >> UC Davis >> BIS 98659

Course Hero has millions of student submitted documents similar to the one
below including study guides, practice problems, reference materials, practice exams, textbook help and tutor support.

Course Hero has millions of student submitted documents similar to the one below including study guides, practice problems, reference materials, practice exams, textbook help and tutor support.
molecules DNA replicate to form identical chromatids Chromosomal DNA is wrapped around histones Stages of Mitosis Stages of Meiosis Synaptonemal complexes at meiosis MITOSIS Phase: Interphase diploid chromosomes decondensed DNA synthesis in S phase two copies of diploid chromosomes condense sister chromatids visible ----- * chromosomes line up on equator -----sister centromeres split chromatids move to opposite poles ------ MEIOSIS I reductional division MEIOSIS II equational division diploid chromosomes decondensed DNA synthesis in S phase two copies of diploid chromosomes condense sister chromatids visible homologs pair and recombine ---------homologous pairs line up on equator ---------------homologs move to opposite poles two copies of haploid in each cell occurrence of interphase varies --------two copies of haploid chromosomes condense sister chromatids visible -------chromosomes line up on equator ------sister centromeres split chromatids move to opposite poles ------- Prophase Metaphase Anaphase Telophase nuclear envelope reforms, chromosomes decondense, cytokinesis two genetically identical diploid cells occurrence of telophase varies cytokinesis two non-identical cells, each has two copies of haploid nuclear envelope reforms, chromosomes decondense cytokinesis four non-identical cells, each has one copy of haploid End result * Recombination can occur during mitosis. Mendel's 1st Law - The law of (equal) segregation. The two members (alleles) of a gene pair segregate from each other into the gametes (egg and sperm/pollen), so that one-half of the gametes carry one member (allele) of the pair, and the other half of the gametes carry the other member (allele). The Five Postulates of Mendel 1) Hereditary determinants are particulate in nature (i.e., non blending). We now call these genes. determinants 2) Each adult plant has two hereditary determinants. Adults carry two alleles of each gene. From the F1 appearance, Mendel reasoned that one determinant can be dominant to another. 3) The two hereditary units separate equally from each other during gamete formation. As a result of meiosis, half the gametes receive one allele of a gene pair, and half receive the other. 4) Gametes unite at random Gametes carrying one allele show no preference in combining with other gametes. 5) During gamete formation, the segregation of alleles of one gene is independent of the segregation of alleles of another gene* (*unless close together, or linked, on same chromosome) Genetic analysis begins with mutants: the seven phenotypic pairs studied by Mendel Cross-pollination and selfing are two types of crosses A single-gene model explains Mendels ratios Single-gene inheritance tracked at the DNA level Sex Drosophila: Ratio of X:Autosome female: XX, XXY male: XY, XO, XYY Humans: Presence of Y chromosome female: XX male: XY How is X equalized? Male X is twice as active as one X in female. X inactivation: one female X is inactivated, Barr body An example of X-linked inheritance An example of X-linked inheritance Pedigree symbols Inheritance of an autosomal recessive disorder Inheritance of an autosomal recessive disorder Inheritance of an autosomal dominant disorder Inheritance of an autosomal dominant disorder Inheritance of an X-linked recessive disorder Inheritance of an X-linked recessive disorder Inheritance of an X-linked dominant disorder Inheritance of an X-linked dominant disorder * Draw mitosis for three pairs of chromosomes. Label the chromosomes with the loci A/a; B/b; G/g. * Draw meiosis for three pairs of chromosomes. Label the chromosomes with the loci A/a; B/b; G/g.
Find millions of documents on Course Hero - Study Guides, Lecture Notes, Reference Materials, Practice Exams and more. Course Hero has millions of course specific materials providing students with the best way to expand their education.

Below is a small sample set of documents:

UC Davis - BIS - 98659
Mendels breeding program that produced a 9 : 3 : 3 : 1 ratioPunnett square illustrating the genotypes underlying a 9 : 3 : 3 : 1 ratioIndependent assortment of chromosomes at meiosis explains Mendels ratioIndependent assortment of chromosomes at meiosi
UC Davis - BIS - 98659
Recessive mutation (and dominant wild type)Dominant mutation (and recessive wild type)Variable expressivity same genotype, different expressionGene sites sensitive to mutation - different types of alleles
UC Davis - BIS - 98659
GenesandInteractionsI. II.ComplementationTest A.Definingthenumberofgenes BiochemicalPathways A.OneGeneOneEnzymeIII. AnalysisofDoubleMutants A.Epistasis B.Suppressors 1Objectives: Knowhowtodoacomplementationtestanddeterminethenumberofgenes Beable
UC Davis - BIS - 98659
GeneticsofBacteriaandtheirVirusesI.Bacterialgenetics A.Introduction 1.Powerinnumbers 2.Growthofbacteriaandnomenclature B.Conjugation 1.F,F 2.Hfr,F C.Transformation D.BacteriophageandTransduction 1.Lytic,lysogenic 2.rIIlocusII.FoundationsofrecombinantDNA
UC Davis - BIS - 98659
ProkaryoticGeneRegulationI.Introduction A.Evidenceofrequirementforregulation II.Protein/DNAinteractions A.Positiveregulation B.Negativeregulation III.Operon A.Lactoseinduciblesystem 1.Regulationinwildtype 2.Mutationalanalysis B.Tryptophanrepressiblesyste
UC Davis - BIS - 98659
EukaryoticGeneRegulationI.Complexregulation:Multiplelevelsandtypes II.Levelsandtypes,withsomeexamples A.ChromatinandDNA 1.Heterochromatin,euchromatin a.Xinactivation b.Positioneffectvariegation 2.DNAmethylation a.Imprinting 2.DNArearrangement a.Antibodyg
UC Davis - BIS - 98659
RecombinantDNAApplicationsI.ConstructionofrecombinantDNA A.Libraries 1.Genomic 2.cDNA B.Screening II.Moleculargeneticdiagnostics A.RFLP B.DNAfingerprinting III.Geneticengineering A.Productionoftransgenicorganisms 1.Variousorganismsandapproaches 2.Focuson
UC Davis - BIS - 98659
GenomicsI.Structuralgenomics A.Constructionofgenomiclibraries B.Physicalmapping C.Bioinformatics II.Functionalgenomics A.Characterizeproteome B.Definetranscriptome 1.Microarrays C.Interactome 1.Yeasttwohybrid 2.Chromatinimmunoprecipitationassay(ChIP)
UC Davis - BIS - 98659
TransposableElementsI.Overview II.Discovery A.BarbaraMcClintockandtheAcDssystem III.Prokaryotictransposableelements A.IS,TnandRplasmids IV.Eukaryotictransposableelements A.Retrotransposons B.DNAtransposons V.DrosophilaPelements A.Pelementstructure B.Gal4
UC Davis - BIS - 98659
Indel mutations result in frameshiftsSlipped mispairing causes repeat expansionOxygen radicals can damage DNAAlternative pairings for 5-bromouracil (5-BU)Intercalating agentsUV-light-generated photoproductsConsequences of point mutations within gene
UC Davis - BIS - 98659
ChromosomalAlterationsI.Deletions A.Mappingrecessivemutationsusingdeletions II.Inversions A.Positioneffect B.Pericentricandparacentric III.Translocations A.Linkagealtered IV.Duplications A.Genebalance V.Changesinchromosomenumber A.Euploidvsaneuploid B.Hu
UC Davis - BIS - 98659
CancerasaGeneticDiseaseI.Cancerarisesatthelevelofanindividualcell II.Balancebetweencelldivisionandcelldeath III.Multihitprocess A.Tumorsuppressors B.Oncogenes IV.PreventionandtreatmentCancerasaGeneticDiseaseObjectives:Knowhoweachofthevocabularytermsfi
UC Davis - BIS - 98659
TranscriptionandTranslationI.Centraldogma II.Transcription A.Initiation,ElongationandTermination B.Prokaryotesvs.Eukaryotes A.Initiation,ElongationandTermination B.Prokaryotesvs.EukaryotesIII.TranslationIV.Mutations A.DNA>RNA>protein V.Methods A.Northe
UC Davis - BIS - 98659
Each cell contains chromosomes, and chromosomes contain genes. Organism-human body contains trillions of cells->each nucleus contains an identical complementation of chromosomes in two copies. Each copy is a genome-> One specific pair chromosome pair->
UC Davis - BIS - 98659
Midterm 2 Bacterial Genetics- conjugation, transformation, and transduction. Transduction: phage-lytic: generalized Lysogenic: specialized Complete media: everything needed to grow. Minimal media: wild type can make additional components and grow. Bacteri
UC Davis - BIS - 98659
1. Prokaryotes: class for bacteria. 2. Viruses: parasitizes bacteria. 3. Phage recombination: when two or more phages of different genotypes both infect the same bacterial cell. 4. Plating: a small amount of liquid culture is spread out into solid agar me
UC Davis - BIS - 98659
1. Nearly half the human genome consists of DNA that can be classified by sequence as transposable elements, yet many of these sequences are incapable of moving throughout the genome. This is best attributed to:(a) Lack of any transposon sequence encodin
UC Davis - BIS - 98659
1. Members of a collection of organisms in a scientists laboratory share a common genotype and display a common detectable phenotype compared to wild-type. This collection is best described as: a) An evolving population b) A mutant strain c) A mutagenized
UC Davis - BIS - 98659
Question 1. Which will denature at the higher temperature? DNA that is: A. 75% AT B. 75% GCQuestion 2. What would be the first 4 bases of the PCR primers for this DNA sequence?5.A T G G T T A A.T G C C C C A A3 3.T A C C A A T T.A C G G G G T T.5Questi
UC Davis - BIS - 98659
Question 1.Susan,amotherwithtypeBblood,hasachildwithtypeOblood. SheclaimsthatJames,whobelievesheistypeAblood,isthefather. Heclaimsthatheisnotthefather.Bloodtestsorderedbythejudge revealthatJamesisindeedtypeAblood. Thejudgerulesthat A.Jamesisrighthecouldn
UC Davis - BIS - 98659
Question 1.A c onju g atio n e xp e rime nt is p e rformed i n Escherichia c oli using t he par e n ts Hfr arg+ lys+ met+ h is+ strS and F- a rg- lys- m et- h is- strR. Th e m atin g was interrupted at several times an d plated on several diffe rent me d
UC Davis - BIS - 98659
Question 6. Inageneralizedtransductionexperiment,theT1phageparticles growingonE.coliwiththegenotypeval+ala+trp+arecollectedand allowedtoinfectE.colicellswiththegenotypevalalatrp. Thecotransductionfrequenciescalculatedforthedifferentgene combinationsare:
UC Davis - BIS - 98659
Question 1.Whatisthegoalofsequencingagenome?Question 2. Nowthatthesequenceoftheentirehuman genomehasbeenobtained,howdoesitrelateto yourgenomicsequence?Question 3. Whatcanthesequenceofthehumangenome tellusaboutthebasicbiologyofhumans?Question 4. Howm
UC Davis - BIS - 98659
Name: _ID: _1. You are working on a wolf genomics project, and are going to make a genomic DNA library of wolf DNA using the vector on the right. a. (10 pts) List the steps you would take to construct this library. What drug(s) will the plasmids without
UC Davis - BIS - 98659
Name: _ID: _1. a.kan tet kan- cut wolf DNA and plasmid DNA with EcoRI, - mix together and ligate the wolf DNA and plasmid DNA fragments, - transform the ligated DNA into bacteria (that are kans and tets) - grow on kan to select for bacteria that have
UC Davis - BIS - 98659
Name: _ID: _1. a. What is the protein sequence encoded by the mRNA written belo w? (1) 5AUGGUAUGUUCCACU3b. Write the sequence of the double stranded DNA that corresponds to this mRNA. Label the 5 and 3 ends. Label which strand is the template for this
UC Davis - BIS - 98659
Name: _ID: _1. a. b. c.met-val-cys-ser-thr 3'-TACCATACAAGGTGA-5' - template 5'-ATGGTATGTTCCACT-3' 3'-TACCATACTAAGGTGA-5' 5'-ATGGTATGATTCCACT-3' 5AUGGUAUGUUCCACU3 met-val-stop The protein is truncated.d.3'-TACATACAAGGTGA-5' 5'-ATGTATGTTCCACT-3' 5AUGUA
UC Davis - BIS - 98659
Name: _ID: _1 . You are working on a wolf genomics project, and are goingto make a genomic DNA library of wolf DNA using the vector on the right. a. (10 pts) List the steps you would take to construct this library. What drug(s) will the plasmids withou
UC Davis - BIS - 98659
Name: _ID: _1. a. - cut wolf DNA and plasmid DNA with EcoRI,- mix together and ligate the wolf DNA and plasmid DNA fragments, - transform the ligated DNA into bacteria (that are kans and tets) - grow on kan to select for bacteria that have a plasmid -
UC Davis - BIS - 98659
SYLLABUS BIS 101 SSII Dr. Deborah A. Kimbrell Text: An Introduction to Genetic Analysis, 9th edition, Griffiths et al. Lecture Date 1 2 3 4 5 M 8/3 T 8/4 W 8/5 Th 8/6 M 8/10 Topic Introduction and Overview: Mendel to Genomics DNA and Replication Single ge
UC Davis - BIS - 98659
Mapping with a 3 point cross Example F1 test cross expect VBP/vbp VBP/vbp x vbp/vbp1 VBP/vbp : 1 vbp/vbpprogeny observed genotype VBP vbp Vbp vBP VbP vBp vbP VBp number 1779 1654 252 241 131 118 13 9 4197 class parental single crossover double crossover
Stanford - CS - 103B
Mehran Sahami CS103BHandout #1 January 7, 2009AdministriviaProfessor: Email: Office: Office Phone: Office Hours: TA: Email: TA: Email: TA: Email: Class web page: Mehran Sahamisahami@cs.stanford.eduGates 180 723-6059 Tuesday 10am-12noon and Thursday 2
Stanford - CS - 103B
Mehran Sahami CS103BHandout #3 January 7, 2009Functions, Functions. Everywhere!Thanks to Maggie Johnson for some portions of this handout.In CS103A, it is likely that you already received an introduction to functions. Since we'll be working more with
Stanford - CS - 103B
Mehran Sahami CS103BHandout #4 January 7, 2009Introduction to SetsPortions of this handout was originally written by Maggie Johnson, however she cannot be held responsible for the humorless jokes now contained herein.Remembering those halcyon days of
Stanford - CS - 103B
Mehran Sahami CS103BHandout #5 January 9, 2009Infinite Sets and CountabilityThanks to Maggie Johnson for some portions of this handout.Infinite SetsIn a finite set, we can always designate one element as the first member, another as the second member
Stanford - CS - 103B
Mehran Sahami CS103BHandout #10 January 23, 2009Analysis of Algorithms: The Recursive CaseWe again thank Maggie Johnson for portions of this handout.Up until now, we have been analyzing non-recursive algorithms, looking at how big-Oh notation may be u
Stanford - CS - 103B
Mehran Sahami CS103BHandout #11 January 23, 2009Analyzing Searching and SortingIn examining methods to analyze both recursive and non-recursive algorithms, it is only fitting to spend a little time looking at a variety of common algorithms and their co
Stanford - CS - 103B
Mehran Sahami CS103BHandout #12 January 23, 2009Problem Set #2 Due: 11:00am on Monday, February 2nd1. Let R be a relation on the set cfw_1, 2, 3, 4, 5 containing the ordered pairs: cfw_<1,1>,<1,2>,<1,3>,<2,3>,<2,4>,<3,1>,<3,4>,<3,5>,<4,2>,<4,5>,<5,1>,<
Stanford - CS - 103B
Mehran Sahami CS103BHandout #13 January 28, 2009Managing a Bestiary of Algorithms: Complexity Classes and NP-CompletenessThanks to Maggie Johnson for some portions of this handout.A Quick Introduction to NP-CompletenessImagine that you have decided t
Stanford - CS - 103B
Mehran Sahami CS103BHandout #16 February 2, 2009Problem Set #3 Due: 11:00am on Wednesday, February 11thNote: in the problems below in which you are asked for a big-Oh running time, we are looking for a tight big-Oh bound (analogous to the big-Theta ()
Stanford - CS - 103B
Mehran Sahami CS103BHandout #17 February 2, 2009Introduction to TreesHierarchical StructuresTrees are very useful conceptual tools for representing relationships among certain classes of items. For example, trees can be used to represent familial rela
Stanford - CS - 103B
Mehran Sahami CS103BHandout #19 February 6, 2009Practice Midterm ProblemsNote: the number of problems here is a larger than you will see on the actual midterm. More problems are provided here just to give you a bit more practice on a broader set of the
Stanford - CS - 103B
Mehran Sahami CS103BHandout #20 February 6, 2009Practice Midterm Problem Solutions(including some hints and shortcuts you might find useful for exams) 1. Order in which nodes are processed if we were to do a reverse preorder traversal on the tree: a, c
Stanford - CS - 106B
CS106B Winter 2009Handout 01CS106B Course InformationJerry Cainjerry@cs.stanford.eduJanuary 7th, 2009Instructor: E-Mail: Office phone: Office: Office hours: Lectures:725-8597 Gates 192 Wednesdays, 10:00 a.m. noon MWF 9:00 9:50 a.m. Gates Building,
Stanford - CS - 106B
CS106B Winter 2009Handout 02Early Programming: Landmarks and LandminesJanuary 7th, 2009Handout written by Julie Zelenski, Mehran Sahami, and Robert Plummer.After todays lecture, you should run home read all of Chapter 1 on your own. We won't teach th
Stanford - CS - 106B
CS106B Winter 2009Handout 03Two-Dimensional Grids and Queen SafetyJanuary 9, 2008This handout was written by Jerry.Today's larger example demonstrates the use of a grid of Boolean valuesthat is, a single declaration of a Grid<bool>to maintain informa
Stanford - CS - 106B
CS106B Winter 2009Handout 04C+ StringsJanuary 12, 2009Original handout written by Neal Kanodia, with help from Steve Jacobson.C+ Strings One of the most useful data types supplied in the C+ libraries is the string. A string is a variable that stores
Stanford - CS - 106B
CS106B Winter 2009Handout 05Crash Course: Records and FilesJanuary 12, 2009Your task is to design a data structure to keep track of the academic departments on campus. There are an unbounded numbers of departments, and each department has a name and a
Stanford - CS - 106B
CS106B Winter 2009Handout 06Assignment 1: Blocky!January 12, 2009Brand- new assignment!Your first assignment has you implement variation on a one-player game called Blocky. The rules are simple: click any single block and drag the mouse to outline a
Stanford - CS - 106B
CS106B Winter 2009Handout 07Good Programming StyleJanuary 14, 2009Thanks to Julie Zelenski, Nick Parlante, and Bob Plummer for this handout.As we will stress all quarter, a working program is only half the challengeconstructing an elegant and well-en
Stanford - CS - 106B
CS106B Winter 2009Handout 08DecompositionJanuary 14th, 2009Due to Nick Parlante.Decomposition is the process of breaking a large problem into more manageable subproblems. The motivating principle is that large problems are disproportionately harder t
Stanford - CS - 106B
CS106B Winter 2009Handout 09Coding StandardsJanuary 14th, 2009Handout written by Nick Parlante. Quite possibly the funniest handout ever.Landmarks in Coding Quality Let's honestly review the conceptual landmarks most programmers use when thinking abo
Stanford - CS - 106B
CS106B Winter 2009Handout 10C+ and CS106 Library ReferenceJanuary 14, 2009Written by Julie Zelenski.You're sitting at your computer, trying to write some code that manipulates a string or stream or draws some graphics. You know the functionality you
Stanford - CS - 106B
CS106B Winter 2009Handout 11Section Handout 1January 14, 2009Problem 1: Compiler, compiler, what do you want? You are working hard on your latest assignment and come up with the following code:enum directionT cfw_ North, East, South, West ; int main(
Stanford - CS - 106B
CS106B Winter 2009Handout 11SSection Solution 1January 14 - 16, 2009Problem 1: Compiler, compiler, what do you want? The line that will not compile in this example is the line that performs the assignment dir = num;. Why not? Enumerated types are repr
Stanford - CS - 106B
CS106B Winter 2009Handout 12MDebugging with XCodeJanuary 16, 2009Many thanks to Justin2, Jason, and Julie for portions of this handout.Using the Xcode debugger Note: this handout refers to Xcode 2.5. The windows for Xcode 3.1 will look slightly diffe
Stanford - CS - 106B
CS106B Winter 2008Handout 13CS106 Library ClassesJanuary 16, 2008Kudos to Julie Zelenski for this fantastic summary of the CS106 utility and container classes.This summer Im going to try something that another lecturer successfully tried last quarter
Stanford - CS - 106B
CS106B Winter 2009Handout 14Electronic SubmissionJanuary 17, 2009This handout was written by Mehran Sahami and updated by Nick Miyake and Jerry Cain.Submission procedures When you submit a completed assignment, you will turn it two versions, a paper
Stanford - CS - 106B
CS106B Winter 2009Handout 15Section Handout 2January 21, 2009Problem 1: Using the Scanner and Stack classes<html><b><i>CS106 rules!</i></b></html>Web browsers use stacks to track html tags such as <b>, <i> or <html>. Every html tag must be matched b
Stanford - CS - 106B
CS106B Winter 2009Handout 15SSection Solution 2January 21 22, 2009Problem 1: Using the Scanner and Stack classes#include "stack.h" #include "scanner.h" bool ProcessOpenTag(Scanner& scanner, Stack<string>& tagStack) cfw_ string tag = scanner.nextToken
Stanford - CS - 106B
CS106B Winter 2009Handout 17CS106 Library Classes: Take IIJanuary 21, 2009Kudos to Julie Zelenski for this fantastic summary of the CS106 utility and container classes.More on Map Last handout, we noted that the map assumes that keys are of string ty