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Chapter 9 Lecture

Course: BIO 141, Spring 2012
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9 Chapter Lecture Respiration CHAPTER 9 CELLULAR RESPIRATION: HARVESTING CHEMICAL ENERGY Section A: The Principles of Energy Harvest 1. Cellular respiration and fermentation are catabolic, energy-yielding pathways 2. Cells recycle the ATP they use for work 3. Redox reactions release energy when electrons move closer to electronegative atoms 4. Electrons fall from organic molecules to oxygen during cellular...

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9 Chapter Lecture Respiration CHAPTER 9 CELLULAR RESPIRATION: HARVESTING CHEMICAL ENERGY Section A: The Principles of Energy Harvest 1. Cellular respiration and fermentation are catabolic, energy-yielding pathways 2. Cells recycle the ATP they use for work 3. Redox reactions release energy when electrons move closer to electronegative atoms 4. Electrons fall from organic molecules to oxygen during cellular respiration 5. The fall of electrons during respiration is stepwise, via NAD + and an electron transport chain Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Introduction Living is work. To perform their many tasks, cells require transfusions of energy from outside sources. In most ecosystems, energy enters as sunlight. Light energy trapped in organic molecules is available to both photosynthetic organisms and others that eat them. Fig. 9.1 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 1. Cellular respiration and fermentation are catabolic, energy-yielding pathways Organic molecules store energy in their arrangement of atoms. Enzymes catalyze the systematic degradation of organic molecules that are rich in energy to simpler waste products with less energy. Some of the released energy is used to do work and the rest is dissipated as heat. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Metabolic pathways that release the energy stored in complex organic molecules are catabolic. One type of catabolic process, fermentation, leads to the partial degradation of sugars in the absence of oxygen. A more efficient and widespread catabolic process, cellular respiration, uses oxygen as a reactant to complete the breakdown of a variety of organic molecules. Most of the processes in cellular respiration occur in mitochondria. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Cellular respiration is similar to the combustion of gasoline in an automobile engine. The overall process is: Organic compounds + O2 -> CO2 + H2O + Energy Carbohydrates, fats, and proteins can all be used as the fuel, but it is traditional to start learning with glucose. C6H12O6 + 6O2 -> 6CO2 + 6H2O + Energy (ATP + heat) The catabolism of glucose is exergonic with a delta G of - 686 kcal per mole of glucose. Some of this energy is used to produce ATP that will perform cellular work. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 2. Cells recycle the ATP they use for work ATP, adenosine triphosphate, is the pivotal molecule in cellular energetics. It is the chemical equivalent of a loaded spring. The close packing of three negatively-charged phosphate groups is an unstable, energy-storing arrangement. Loss of the end phosphate group relaxes the spring. The price of most cellular work is the conversion of ATP to ADP and inorganic phosphate (Pi). An animal cell regenerates ATP from ADP and Pi by the catabolism of organic molecules. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The transfer of the terminal phosphate group from ATP to another molecule is phosphorylation. This changes the shape of the receiving molecule, performing work (transport, mechanical, or chemical). When the phosphate groups leaves the molecule, the molecule returns to its alternate Fig. 9.2 shape. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 3. Redox reactions release energy when electrons move closer to electronegative atoms Catabolic pathways relocate the electrons stored in food molecules, releasing energy that is used to synthesize ATP. Reactions that result in the transfer of one or more electrons from one reactant to another are oxidation-reduction reactions, or redox reactions. The loss of electrons is called oxidation. The addition of electrons is called reduction. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The formation of table salt from sodium and chloride is a redox reaction. Na + Cl -> Na+ + Cl Here sodium is oxidized and chlorine is reduced (its charge drops from 0 to -1). More generally: Xe- + Y -> X + Ye X, the electron donor, is the reducing agent and reduces Y. Y, the electron recipient, is the oxidizing agent and oxidizes X. Redox reactions require both a donor and acceptor. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Redox reactions also occur when the movement of electrons is not complete but involve a change in the degree of electron sharing in covalent bonds. In the combustion of methane to form water and carbon dioxide, the nonpolar covalent bonds of methane (C-H) and oxygen (O=O) are converted to polar covalent bonds (C=O and O-H). Fig. 9.3 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings When these bonds shift from nonpolar to polar, the electrons move from positions equidistant between the two atoms for a closer position to oxygen, the more electronegative atom. Oxygen is one of the most potent oxidizing agents. An electron looses energy as it shifts from a less electronegative atom to a more electronegative one. A redox reaction that relocates electrons closer to oxygen releases chemical energy that can do work. To reverse the process, energy must be added to pull an electron away from an atom. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 4. Electrons fall from organic molecules to oxygen during cellular respiration In cellular respiration, glucose and other fuel molecules are oxidized, releasing energy. In the summary equation of cellular respiration: C6H12O6 + 6O2 -> 6CO2 + 6H2O Glucose is oxidized, oxygen is reduced, and electrons loose potential energy. Molecules that have an abundance of hydrogen are excellent fuels because their bonds are a source of hilltop electrons that fall closer to oxygen. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The cell has a rich reservoir of electrons associated with hydrogen, especially in carbohydrates and fats. However, these fuels do not spontaneously combine with O2 because they lack the activation energy. Enzymes lower the barrier of activation energy, allowing these fuels to be oxidized slowly. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 5. The fall of electrons during respiration is stepwise, via NAD+ and an electron transport chain Cellular respiration does not oxidize glucose in a single step that transfers all the hydrogen in the fuel to oxygen at one time. Rather, glucose and other fuels are broken down gradually in a series of steps, each catalyzed by a specific enzyme. At key steps, hydrogen atoms are stripped from glucose and passed first to a coenzyme, like NAD+ (nicotinamide adenine dinucleotide). Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Dehydrogenase enzymes strip two hydrogen atoms from the fuel (e.g., glucose), pass two electrons and one proton to NAD+ and release H+. H-C-OH + NAD+ -> C=O + NADH + H+ Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings This changes the oxidized form, NAD+, to the reduced form NADH. NAD + functions as the oxidizing agent in many of the redox steps during the catabolism of glucose. Fig. 9.4 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The electrons carried by NADH loose very little of their potential energy in this process. This energy is tapped to synthesize ATP as electrons fall from NADH to oxygen. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Unlike the explosive release of heat energy that would occur when H2 and O2 combine, cellular respiration uses an electron transport chain to break the fall of electrons to O2 into several steps. Fig. 9.5 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The electron transport chain, consisting of several molecules (primarily proteins), is built into the inner membrane of a mitochondrion. NADH shuttles electrons from food to the top of the chain. At the bottom, oxygen captures the electrons and H+ to form water. The free energy change from top to bottom is -53 kcal/mole of NADH. Electrons are passed by increasingly electronegative molecules in the chain until they are caught by oxygen, the most electronegative. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Introduction Living is work. To perform their many tasks, cells require transfusions of energy from outside sources. In most ecosystems, energy enters as sunlight. Light energy trapped in organic molecules is available to both photosynthetic organisms and others that eat them. Fig. 9.1 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 1. Cellular respiration and fermentation are catabolic, energy-yielding pathways Organic molecules store energy in their arrangement of atoms. Enzymes catalyze the systematic degradation of organic molecules that are rich in energy to simpler waste products with less energy. Some of the released energy is used to do work and the rest is dissipated as heat. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Metabolic pathways that release the energy stored in complex organic molecules are catabolic. One type of catabolic process, fermentation, leads to the partial degradation of sugars in the absence of oxygen. A more efficient and widespread catabolic process, cellular respiration, uses oxygen as a reactant to complete the breakdown of a variety of organic molecules. Most of the processes in cellular respiration occur in mitochondria. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Cellular respiration is similar to the combustion of gasoline in an automobile engine. The overall process is: Organic compounds + O2 -> CO2 + H2O + Energy Carbohydrates, fats, and proteins can all be used as the fuel, but it is traditional to start learning with glucose. C6H12O6 + 6O2 -> 6CO2 + 6H2O + Energy (ATP + heat) The catabolism of glucose is exergonic with a delta G of - 686 kcal per mole of glucose. Some of this energy is used to produce ATP that will perform cellular work. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 2. Cells recycle the ATP they use for work ATP, adenosine triphosphate, is the pivotal molecule in cellular energetics. It is the chemical equivalent of a loaded spring. The close packing of three negatively-charged phosphate groups is an unstable, energy-storing arrangement. Loss of the end phosphate group relaxes the spring. The price of most cellular work is the conversion of ATP to ADP and inorganic phosphate (Pi). An animal cell regenerates ATP from ADP and Pi by the catabolism of organic molecules. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The transfer of the terminal phosphate group from ATP to another molecule is phosphorylation. This changes the shape of the receiving molecule, performing work (transport, mechanical, or chemical). When the phosphate groups leaves the molecule, the molecule returns to its alternate Fig. 9.2 shape. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 3. Redox reactions release energy when electrons move closer to electronegative atoms Catabolic pathways relocate the electrons stored in food molecules, releasing energy that is used to synthesize ATP. Reactions that result in the transfer of one or more electrons from one reactant to another are oxidation-reduction reactions, or redox reactions. The loss of electrons is called oxidation. The addition of electrons is called reduction. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings CHAPTER 9 CELLULAR RESPIRATION: HARVESTING CHEMICAL ENERGY Section B: The Process of Cellular Respiration 1. Respiration involves glycolysis, the Krebs cycle, and electron transport: an overview 2. Glycolysis harvests chemical energy by oxidizing glucose to pyruvate: a closer look 3. The Krebs cycle completes the energy-yielding oxidation of organic molecules: a closer look 4. The inner mitochondrial membrane couples electron transport to ATP synthesis: a closer look 5. Cellular respiration generates many ATP molecules for each sugar molecule it oxidizes: a review Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 1. Respiration involves glycolysis, the Krebs cycle, and electron transport: an overview Respiration occurs in three metabolic stages: glycolysis, the Krebs cycle, and the electron transport chain and oxidative phosphorylation. Fig. 9.6 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Glycolysis occurs in the cytoplasm. It begins catabolism by breaking glucose into two molecules of pyruvate. The Krebs cycle occurs in the mitochondrial matrix. It degrades pyruvate to carbon dioxide. Several steps in glycolysis and the Krebs cycle transfer electrons from substrates to NAD+, forming NADH. NADH passes these electrons to the electron transport chain. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings In the electron transport chain, the electrons move from molecule to molecule until they combine with oxygen and hydrogen ions to form water. As they are passed along the chain, the energy carried by these electrons is stored in the mitochondrion in a form that can be used to synthesize ATP via oxidative phosphorylation. Oxidative phosphorylation produces almost 90% of the ATP generated by respiration. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Some ATP is also generated in glycolysis and the Krebs cycle by substrate-level phosphorylation. Here an enzyme transfers a phosphate group from an organic molecule (the substrate) to ADP, forming ATP. Fig. 9.7 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Respiration uses the small steps in the respiratory pathway to break the large denomination of energy contained in glucose into the small change of ATP. The quantity of energy in ATP is more appropriate for the level of work required in the cell. Ultimately 38 ATP are produced per mole of glucose that is degraded to carbon dioxide and water by respiration. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 2. Glycolysis harvests chemical energy by oxidizing glucose to pyruvate: a closer look During glycolysis, glucose, a six carbon-sugar, is split into two, three-carbon sugars. These smaller sugars are oxidized and rearranged to form two molecules of pyruvate. Each of the ten steps in glycolysis is catalyzed by a specific enzyme. These steps can be divided into two phases: an energy investment phase and an energy payoff phase. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings In the energy investment phase, ATP provides activation energy by phosphorylating glucose. This requires 2 ATP per glucose. In the energy payoff phase, ATP is produced by substrate-level phosphorylation and NAD+ is reduced to NADH. 4 ATP (net) and 2 NADH are produced per glucose. Fig. 9.8 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fig. 9.9a Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fig. 9.9b Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The net yield from glycolysis is 2 ATP and 2 NADH per glucose. No CO2 is produced during glycolysis. Glycolysis occurs whether O2 is present or not. If O2 is present, pyruvate moves to the Krebs cycle and the energy stored in NADH can be converted to ATP by the electron transport system and oxidative phosphorylation. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings energy-yielding oxidation of organic molecules: a closer look More than three quarters of the original energy in glucose is still present in two molecules of pyruvate. If oxygen is present, pyruvate enters the mitochondrion where enzymes of the Krebs cycle complete the oxidation the of organic fuel to carbon dioxide. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings As pyruvate enters the mitochondrion, a multienzyme complex modifies pyruvate to acetyl CoA which enters the Krebs cycle in the matrix. A carboxyl group is removed as CO2. A pair of electrons is transferred from the remaining two-carbon fragment to NAD+ to form NADH. The oxidized fragment, acetate, combines with coenzyme A to form acetyl CoA. Fig. 9.10 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The Krebs cycle is named after Hans Krebs who was largely responsible for elucidating its pathways in the 1930s. This cycle begins when acetate from acetyl CoA combines with oxaloacetate to form citrate. Ultimately, the oxaloacetate is recycled and the acetate is broken down to CO2. Each cycle produces one ATP by substrate-level phosphorylation, three NADH, and one FADH2 (another electron carrier) per acetyl CoA. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The Krebs cycle consists of eight steps. Fig. 9.11 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The conversion of pyruvate and the Krebs cycle produces large quantities of electron carriers. Fig. 9.12 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 4. The inner mitochondrial membrane couples electron transport to ATP synthesis: a closer look Only 4 of 38 ATP ultimately produced by respiration of glucose are derived from substratelevel phosphorylation. The vast majority of the ATP comes from the energy in the electrons carried by NADH (and FADH2). The energy in these electrons is used in the electron transport system to power ATP synthesis. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Thousands of copies of the electron transport chain are found in the extensive surface of the cristae, the inner membrane of the mitochondrion. Most components of the chain are proteins that are bound with prosthetic groups that can alternate between reduced and oxidized states as they accept and donate electrons. Electrons drop in free energy as they pass down the electron transport chain. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Electrons carried by NADH are transferred to the first molecule in the electron transport chain, flavoprotein. The electrons continue along the chain which includes several cytochrome proteins and one lipid carrier. The electrons carried by FADH2 have lower free energy and are added to a later point in the chain. Fig. 9.13 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Electrons from NADH or FADH2 ultimately pass to oxygen. For every two electron carriers (four electrons), one O2 molecule is reduced to two molecules of water. The electron transport chain generates no ATP directly. Its function is to break the large free energy drop from food to oxygen into a series of smaller steps that release energy in manageable amounts. The movement of electrons along the electron transport chain does contribute to chemiosmosis Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings A protein complex, ATP synthase, in the cristae actually makes ATP from ADP and Pi. ATP used the energy of an existing proton gradient to power ATP synthesis. This proton gradient develops between the intermembrane space and the matrix. Fig. 9.14 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The proton gradient is produced by the movement of electrons along the electron transport chain. Several chain molecules can use the exergonic flow of electrons to pump H+ from the matrix to the intermembrane space. This concentration of H+ is the proton-motive force. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fig. 9.15 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The ATP synthase molecules are the only place that will allow H+ to diffuse back to the matrix. This exergonic flow of H+ is used by the enzyme to generate ATP. This coupling of the redox reactions of the electron transport chain to ATP synthesis is called chemiosmosis. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The mechanism of ATP generation by ATP synthase is still an area of active investigation. As hydrogen ions flow down their gradient, they cause the cylinder portion and attached rod of ATP synthase to rotate. The spinning rod causes a conformational change in the knob region, activating catalytic sites where ADP and inorganic phosphate combine to make ATP. Fig. 9.14 Chemiosmosis is an energy-coupling mechanism that uses energy stored in the form of an H+ gradient across a membrane to drive cellular work. In the mitochondrion, chemiosmosis generates ATP. Chemiosmosis in chloroplasts also generates ATP, but light drives the electron flow down an electron transport chain and H+ gradient formation. Prokaryotes generate H+ gradients across their plasma membrane. They can use this proton-motive force not only to generate ATP but also to pump nutrients and waste products across the membrane and to rotate their flagella. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 5. Cellular respiration generates many ATP molecules for each sugar molecule it oxidizes: a review During respiration, most energy flows from glucose -> NADH -> electron transport chain -> proton-motive force -> ATP. Considering the fate of carbon, one six-carbon glucose molecule is oxidized to six CO2 molecules. Some ATP is produced by substrate-level phosphorylation during glycolysis and the Krebs cycle, but most comes from oxidative phosphorylation. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Each NADH from the Krebs cycle and the conversion of pyruvate contributes enough energy to generate a maximum of 3 ATP (rounding up). The NADH from glycolysis may also yield 3 ATP. Each FADH2 from the Krebs cycle can be used to generate about 2ATP. In some eukaryotic cells, NADH produced in the cytosol by glycolysis may be worth only 2 ATP. The electrons must be shuttled to the mitochondrion. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings In some shuttle systems, the electrons are passed to Assuming the most energy-efficient shuttle of NADH from glycolysis, a maximum yield of 34 ATP is produced by oxidative phosphorylation. This plus the 4 ATP from substrate-level phosphorylation gives a bottom line of 38 ATP. This maximum figure does not consider other uses of the proton-motive force. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fig. 9.16 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings How efficient is respiration in generating ATP? Complete oxidation of glucose releases 686 kcal per mole. Formation of each ATP requires at least 7.3 kcal/mole. Efficiency of respiration is 7.3 kcal/mole x 38 ATP/glucose/686 kcal/mole glucose = 40%. The other approximately 60% is lost as heat. Cellular respiration is remarkably efficient in energy conversion. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings CHAPTER 9 CELLULAR RESPIRATION: HARVESTING CHEMICAL ENERGY Section C: Related Metabolic Processes 1. Fermentation allows some cells to produce ATP without the help of oxygen 2. Glycolysis and the Krebs cycle connect to many other metabolic pathways 3. Feedback mechanisms control cellular respiration Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 1. Fermentation enables some cells to produce ATP without the help of oxygen Oxidation refers to the loss of electrons to any electron acceptor, not just to oxygen. In glycolysis, glucose is oxidized to two pyruvate molecules with NAD+ as the oxidizing agent, not O2. Some energy from this oxidation produces 2 ATP (net). If oxygen is present, additional ATP can be generated when NADH delivers its electrons to the electron transport chain. Glycolysis generates 2 ATP whether oxygen is present (aerobic) or not (anaerobic). Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Anaerobic catabolism of sugars can occur by fermentation. Fermentation can generate ATP from glucose by substrate-level phosphorylation as long as there is a supply of NAD+ to accept electrons. If the NAD+ pool is exhausted, glycolysis shuts down. Under aerobic conditions, NADH transfers its electrons to the electron transfer chain, recycling NAD +. Under anaerobic conditions, various fermentation pathways generate ATP by glycolysis and recycle NAD+ by transferring electrons from NADH to pyruvate or derivatives of pyruvate. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings In alcohol fermentation, pyruvate is converted to ethanol in two steps. First, pyruvate is converted to a two-carbon compound, acetaldehyde by the removal of CO2. Second, acetaldehyde is reduced by NADH to ethanol. Alcohol fermentation by yeast is used in brewing and winemaking. Fig. 9.17a Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings During lactic acid fermentation, pyruvate is reduced directly by NADH to form lactate (ionized form of lactic acid). Lactic acid fermentation by some fungi and bacteria is used to make cheese and yogurt. Muscle cells switch from aerobic respiration to lactic acid fermentation to generate ATP when O2 is scarce. The waste product, lactate, may cause muscle fatigue, but ultimately it is converted back to pyruvate in the liver. Fig. 9.17b Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fermentation and cellular respiration are anaerobic and aerobic alternatives, respectively, for producing ATP from sugars. Both use glycolysis to oxidize sugars to pyruvate with a net production of 2 ATP by substrate-level phosphorylation. Both use NAD+ as an electron acceptor. In fermentation, the electrons of NADH are passed to an organic molecule, regenerating NAD+. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings In respiration, the electrons of NADH are ultimately passed to O2, generating ATP by oxidative phosphorylation. In addition, even more ATP is generated from the oxidation of pyruvate in the Krebs cycle. Without oxygen, the energy still stored in pyruvate is unavailable to the cell. Under aerobic respiration, a molecule of glucose yields 38 ATP, but the same molecule of glucose yields only 2 ATP under anaerobic respiration. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Some organisms (facultative anaerobes), including yeast and many bacteria, can survive using either fermentation or respiration. At a cellular level, human muscle cells can behave as facultative anaerobes, but nerve cells cannot. For facultative anaerobes, pyruvate is a fork in the metabolic road that leads to two alternative routes. Fig. 9.18 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The oldest bacterial fossils are over 3.5 billion years old, appearing long before appreciable quantities of O2 accumulated in the atmosphere. Therefore, the first prokaryotes may have generated ATP exclusively from glycolysis. The fact that glycolysis is also the most widespread metabolic pathway and occurs in the cytosol without membrane-enclosed organelles, suggests that glycolysis evolved early in the history of life. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 2. Glycolysis and the Krebs cycle connect to many other metabolic pathways Glycolysis can accept a wide range of carbohydrates. Polysaccharides, like starch or glycogen, can be hydrolyzed to glucose monomers that enter glycolysis. Other hexose sugars, like galactose and fructose, can also be modified to undergo glycolysis. The other two major fuels, proteins and fats, can also enter the respiratory pathways, including glycolysis and the Krebs cycle, used by carbohydrates. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Proteins must first be digested to individual amino acids. Amino acids that will be catabolized must have their amino groups removed via deamination. The nitrogenous waste is excreted as ammonia, urea, or another waste product. The carbon skeletons are modified by enzymes and enter as intermediaries into glycolysis or the Krebs cycle depending on their structure. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The energy of fats can also be accessed via catabolic pathways. Fats must be digested to glycerol and fatty acids. Glycerol can be converted to glyceraldehyde phosphate, an intermediate of glycolysis. The rich energy of fatty acids is accessed as fatty acids are split into two-carbon fragments via beta oxidation. These molecules enter the Krebs cycle as acetyl CoA. In fact, a gram of fat will generate twice as much ATP as a gram of carbohydrate via aerobic respiration. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Carbohydrates, fats, and proteins can all be catabolized through the same pathways. Fig. 9.19 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings The metabolic pathways of respiration also play a role in anabolic pathways of the cell. Not all the organic molecules of food are completely oxidized to make ATP. Intermediaries in glycolysis and the Krebs cycle can be diverted to anabolic pathways. For example, a human cell can synthesize about half the 20 different amino acids by modifying compounds from the Krebs cycle. Glucose can be synthesized from pyruvate and fatty acids from acetyl CoA. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Glycolysis and the Krebs cycle function as metabolic interchanges that enable cells to convert one kind of molecule to another as needed. For example, excess carbohydrates and proteins can be converted to fats through intermediaries of glycolysis and the Krebs cycle. Metabolism is remarkably versatile and adaptable. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings 3. Feedback mechanisms control cellular respiration Basic principles of supply and demand regulate the metabolic economy. If a cell has an excess of a certain amino acid, it typically uses feedback inhibition to prevent the diversion of more intermediary molecules from the Krebs cycle to the synthesis pathway of that amino acid. The rate of catabolism is also regulated, typically by the level of ATP in the cell. If ATP levels drop, catabolism speeds up to produce more ATP. Control of catabolism is based mainly on regulating the activity of enzymes at strategic points in the catabolic pathway. One strategic point occurs in the third step of glycolysis, catalyzed by phosphofructokinase. Fig. 9.20 Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Allosteric regulation of phosphofructokinase sets the pace of respiration. This enzyme is inhibited by ATP and stimulated by AMP (derived from ADP). It responds to shifts in balance between production and degradation of ATP: ATP <-> ADP + Pi <-> AMP + Pi. Thus, when ATP levels are high, inhibition of this enzyme slows glycolysis. When ATP levels drop and ADP and AMP levels rise, the enzyme is active again and glycolysis speeds up. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings Citrate, the first product of the Krebs cycle, is also an inhibitor of phosphofructokinase. This synchronizes the rate of glycolysis and the Krebs cycle. Also, if intermediaries from the Krebs cycle are diverted to other uses (e.g., amino acid synthesis), glycolysis speeds up to replace these molecules. Metabolic balance is augmented by the control of other enzymes at other key locations in glycolysis and the Krebs cycle. Cells are thrifty, expedient, and responsive in their metabolism. Copyright 2002 Pearson Education, Inc., publishing as Benjamin Cummings
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Chapter 7 LectureCell biologyCHAPTER 7A TOUR OF THE CELLSection A: How We Study Cells1. Microscopes provide windows to the world of the cell2. Cell biologists can isolate organelles to study their functionCopyright 2002 Pearson Education, Inc., pub
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Chapter 6 LectureMetabolism1. The chemistry of life is organizedinto metabolic pathway The totality of an organisms chemical reactions iscalled metabolism. A cells metabolism is an elaborate road map ofthe chemical reactions in that cell. Metaboli
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Chapter 3 LectureWaterIntroduction Because water is the substance that makespossible life as we know it on Earth,astronomers hope to find evidence of water onnewly discovered planets orbiting distant stars. Life on Earth began in water and evolved
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Chapter 1 A.P.Themes1. Each level of biological organization hasemergent properties Lifes basic characteristic is a high degree oforder. Biological organization is based on ahierarchy of structural levels, each buildingon the levels below. At the
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Chapter 41 LectureAnimal NutritionCHAPTER 41ANIMAL NUTRITIONSection A: Nutritional Requirements1. Animals are heterotrophs that require food for fuel, carbon skeletons, andessential nutrients: an overview2. Homeostatic mechanisms manage an animals
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Chapter 37 LecturePlant nutritionCHAPTER 37PLANT NUTRITIONSection A: Nutritional Requirements of Plants1. The chemical composition of plants provides clues to their nutritionalrequirements2. Plants require nine macronutrients and at least eight mic
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Chapter 38 LecturePlant ReproductionCHAPTER 38PLANT REPRODUCTION ANDBIOTECHNOLOGYSection A1: Sexual Reproduction1. Sporophyte and gametophyte generations alternate in the life cycles ofplants: a review2. Flowers are specialized shoots bearing the
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Chapter 36 LecturePlant TranspirationCHAPTER 36TRANSPORT IN PLANTSSection A: An Overview of Transport Mechanismsin Plants1. Transport at the cellular level depends on the selective permeability ofmembranes2. Proton pumps play a central role in tra
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Chapter 33 LectureInvertebrate SurveyCHAPTER 33INVERTEBRATESSection A: Parazoa1. Phylum Porifera: Sponges are sessile with porous bodies and choanocytesCopyright 2002 Pearson Education, Inc., publishing as Benjamin CummingsIntroduction More than a
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Chapter 31 LectureCHAPTER 31FUNGISection A: Introduction to the Fungi1. Absorptive nutrition enables fungi to live as decomposers and symbionts2. Extensive surface area and rapid growth adapt fungi for absorptivenutrition3. Fungi disperse and repro
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Chapter 29 LectureCHAPTER 29PLANT DIVERSITY I: HOW PLANTSCOLONIZED LANDSection A: An Overview of Land Plant Evolution1. Evolutionary adaptations to terrestrial living characterize the four maingroups of land plants2. Charophyceans are the green alg
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Chapter 28 LectureCHAPTER 28THE ORIGINS OF EUKAYOTICDIVERSITYSection A: Introduction to the Protists1. Systematists have split protists into many kingdoms2. Protists are the most diverse of all eukaryotesCopyright 2002 Pearson Education, Inc., publ
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Chapter 22 LectureCHAPTER 22DESCENT WITH MODIFICATION:A DARWINIAN VIEW OF LIFESection A: Historical Context for Evolutionary Theory1. Western culture resisted evolutionary views of life2. Theories of geological gradualism helped clear the path fore
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Chapter 16 LectureCHAPTER 16THE MOLECULE BASIS OFINHERITANCESection A: DNA as the Genetic Material1. The search for the genetic material lead to DNA2. Watson and Crick discovered the double helix by building models toconform to X-ray dataCopyright
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Chapter 12 LectureCHAPTER 12THE CELL CYCLESection A: The Key Roles of Cell Division1. Cell division functions in reproduction, growth, and repair2. Cell division distributes identical sets of chromosomes to daughter cellsCopyright 2002 Pearson Educa
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Chapter 10 LecturePhotosynthesis1. Plants and other autotrophs arethe producers of the biosphere Photosynthesis nourishes almost all of the livingworld directly or indirectly. All organisms require organic compounds for energyand for carbon skeleto
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Chapter 4 LectureOrganic ChemistryIntroduction Although cells are 70-95% water, the restconsists mostly of carbon-based compounds. Proteins, DNA, carbohydrates, and othermolecules that distinguish living matter frominorganic material are all compos
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Animal Nutrition-Animals are heterotrophs requiring food for fuel, carbon skeletons, and essential nutrients. They obtain food from oxidation of organic molecules suchas fats and glucose. Animals have basic animal requirements that are needed to maintai
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BIOLOGY - Vertebrate EvolutionAndrew Ho per.4CHORDATA1. NotochordSubphylumUrochordata-Examples: tunicates, sea squirtsSuperclassAgnatha- Examples: lampreys, hagfishesLongitudinal, flexible rod located betweenthe digestive tube and the nerve cor
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Patrick Patena. AP Biology. Period 5. June 15, 2006Body StructureEukaryotesHeterotrophs; extracellular digestionAcquire nutrients by absorption as decomposers(saprobes), parasites, or mutualistic symbiontsFungal bodies are constructed by tubular wal
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Origins of Eukaryotic DiversityFeatures Unique to Eukaryotes:-Evidence of Endosymbiosismembrane-enclosed nucleusmitochondriacholorplastsendomembrane systemcytoskeletonmultiple chromosomes consisting of linear DNA moleculescompactly arranged with
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CLONING GENES WITH RECOMBINANT DNA VECTORSDNA Technology is extremely relevant and applicablein all areas of todays world. Through the cloning andanalysis of genes and DNA, the manipulation of DNAhas been made possible for various research andcommerc
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Chapter 18 - Microbial Models: The Genetics of BacteriaImportant Genetic Elements of Bacteria(a) Plasmids: small, self-replicating DNA molecules, small numberof genes, some can undergo reversible incorporation into the cell.(b) Episomes: genetic eleme
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Ch. 17: Gene to ProteinThe three main processes linking gene to protein are:TranscriptionRNA splicing is the removal of a large portion of theRNA molecule that was initially synthesized. Theaverage length of a transcription unit along a eukaryoticDN
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Molecular Basis of InheritanceCh. 16 Overview:DNA AS THE GENETIC MATERIALThe search for the genetic material led to DNAWatson and Crick discovered the double helixby building models to conform to X-ray dataDNA REPLICATION AND REPAIRDuring DNA repli
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Chapter 15:Chromosomal Basis of InheritanceAlterations of Chromosomes:Any change in base order can lead to mutations.There are many different ways they can occur.a) Deletion removes a chromosomalsegment.b) Duplication repeats a segment.c) Inversio
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Mendel and the Gene IdeaBasic TermsLaw of Independent AssortmentGene- heritable units parents pass on to offspringCharacter- a heritable featureTrait- each variant for a character. ex. purple or whiteAllele- the alternative versions of a genePhenot
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Meiosis and Genetic Diversity Part IIMeiosis Step By StepInterphase I: During this stage, thechromosomes replicate.Prophase I: Chromosomes condense.Homologous chromosomes come together inpairs (called synapsis), forming a complex of fourchromosomes
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Ch 13: Meiosis- The Process of Producing GametesKey TermsSimplified MeiosisMeiosis- A type of cell division unique to thegonads. The end result is sex cells with half thechromosome number of the original cell.Designed to compensate for the doubling
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Cell MetabolismMetabolism (from the Greek wordmetabole, which means change) isthe totality of an organismschemical processes. Metabolicpathways (each step of which iscatalyzed by an enzyme) are seriesof reactions that manage materialand energy res
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Membrane StructureA membrane is a fluid mosaic oflipids, proteins, andcarbohydrates. Integral proteins areembedded in the lipid bilayer;peripheral proteins are attached tothe surface. The inside and outsidemembrane faces differ incomposition. Carb
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Lysosomes a membranebounded sac of hydrolytic enzymesthat the cell uses to digestmacromolecules.Contractile Vacuoles- pumpsexcess water out of the cell.Central Vacuole- in plant cells;is a place to store organiccompounds.Chloroplast- in plant cel
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PolysaccharidesStarch is a storage polysaccharide of plants consisting entirely of glucose monomers. Plantsstore it as granules within plastids. The polysaccharide in animals is glycogen, which is moreextensively branched than starch. It is stored in m
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Carbon and The Molecular Diversityof LifeJosh YeePeriod 3BiologyThe Importance of CarbonWhile the cell is composed of 70% to95% water, the rest consists ofcarbon-based compounds. The studyof these carbon-based compounds, ororganics, is called or
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Basic ConceptsWater is the most important substancenecessary to the existence of lifeEvery living organism carries some amount ofwater in itWater is the medium in which most vitalchemical reactions are taken placeWater is a polar moleculeOnly subs
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The Chemical Context of Life8Subatomic Particles, Atom and MoleculesBasic Concepts Electron configuration - determine thechemical characteristic of an substance Atoms and Molecules Chemical Elements and CompoundsMolecular bonding Molecules struct
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2) Nehmen Sie ein schon bekanntes Mrchen und erzhlen Sie es aus einer anderenPerspektive. Zum Beispiel, wenn die Hauptfigur des Mrchens eine Prinzessin und eineHeldin ist, erzhlen Sie das Mrchen statt dessen aus der Perspektive des Bsewichts,der Hexe,