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Lecture 3_CAO_330

Course: BSCI 330, Spring 2012
School: Maryland
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Lecture 1/31/12 3: The Nucleus The nuclear membrane 1 1/31/12 The nuclear pore complex (NPC) EM From the Nuclear side Nuclear Transport (Gated transport) [Dr. Kwaks part] 2 1/31/12 Lamina Assembly Intermediate proteins progeria control The nuclear lamina 3 1/31/12 Nucleolus Function of Nucleolus: transcribe and assemble rRNA into ribosome subunits Chromosomes 4 1/31/12 The...

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Lecture 1/31/12 3: The Nucleus The nuclear membrane 1 1/31/12 The nuclear pore complex (NPC) EM From the Nuclear side Nuclear Transport (Gated transport) [Dr. Kwaks part] 2 1/31/12 Lamina Assembly Intermediate proteins progeria control The nuclear lamina 3 1/31/12 Nucleolus Function of Nucleolus: transcribe and assemble rRNA into ribosome subunits Chromosomes 4 1/31/12 The cell cycle The Chromosomes during Cell Cycle Three major components of an eukaryo6c chromosome kinetochore 5 1/31/12 Chromosome Packing The SMCs in Condensins Chromosome Packing The Nucleosome 6 1/31/12 The Histone Code (epigene6cs) Decipher the Histone The Codes packaging informa6on can be inherited 7 1/31/12 The Centromere A simple model for centromere in yeast Karyotype: a complete set of chromosomes at mitosis The human genome comprises 23 pairs of chromosomes. 8 1/31/12 Experiments in my lab Cell line 155 46,XX,t(2;22) The banding paBerns of human chromosomes (stained with Giemsa stain) 8466 46,XX (normal) Real exp 9 1/31/12 Abnormalities Ch 4 Ch 12 Ch 4 Ch 12 Recap Structure of Envelope and nuclear pore complex Function of the Nucleolus Nuclear lamina Chromosome packaging: nucleosomes, 30 nm fibers. Nucleosome structure and components Histone code Karyotype analysis 10
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Maryland - BSCI - 330
Lecture 4: Membranes1Key functions Compartmentalizes the cell Provides a selectively permeable barrier. Not everything crosses the membrane Responds to external signals Hormones Stress signals Transduces energy Mitochondria Chloroplasts Provid
Maryland - BSCI - 330
!"#"$!%&'()*+'%,%-./01'12+3.'%456)'17-8%9%)5:'6%0;%<=:=/6%>?06:?0<=:=/%@<5(0<=:=/%A?0<'6)'+0<%&=:=/%3660(=3)'/%:+0)'=.6%7>'+=:?'+3<%:+0)'=.6%7&=:=/%3.(?0+'/%:+0)'=.6%7!"#$%&'()*&+#$,"-)-Polar heads on outside, nonpolar tails on inside-How prot
Maryland - BSCI - 330
!"#$"#!%&'()*+'%,%-.)/(0/12+./1%312%405/+/6537)%!"#$#%&-Mitochondia is aerobicbacteria because theyc an metabolize oxygen-End up with anaerobic, heterotrophicprokaryote: still DNAfloating in thec ytoplasm-Plasma membranegets invaginated andp
Maryland - BSCI - 330
Lecture 2. Cell structureProkaryotes vs eukaryotesOrigin of eukaryotic cellsOrganelles in eukaryotesMajor macromolecules in eukaryotic cellsProkaryotic vs Eukaryotic cellEpithelial cell (rat)E. coli Where is the genetic material? Any cytoplasmic
Maryland - BSCI - 330
Cytoskeleton and Nucleoskeleton (I)Chapter 16****Green signal: microtubulesRed Signal: actin filaments or microfilamentsCommon properties- Made of proteins- Dynamic properties- Form stablestructures- Coordinate withinternal andexternal sign
Maryland - BSCI - 330
Office hrs: Tues & Thursday 4:00-5:00 pm.jkwak@umd.eduTechniques in Cell and Molecular Biology!!Chapter 9: Visualizing Cells!Chapter 8: Manipulating Proteins, DNA, and RNA!!!Chap 9: light microscope, radiosotopeChap 8: 1.cell culture, hybridomas,
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2/5/12The prokaryotes are coming,the prokaryotes are coming!The prokaryotes are coming,the prokaryotes are coming!Brief introductionEvolutionary originsBasic featuresBacteria several major groupsBacteria pathogenesisArchaea extremophilesMetabol
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2/6/12Prokaryotic Diversity II Coming attractionsEvolutionary originsBasic featuresBacteria several major groupsBacteria - pathogenesisArchaea extremophilesMetabolic diversityBioenergetics redox reactionsBioenergetics - electron transportchains
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2/9/12Prokaryotic Diversity III Coming attractionsClass announcements1. Today HW2 phylogenetic trees due2. No homework due next week3. Next week - Use your study group to prepare for first mid-term(Classes - Introduction (1) to Bioenergetics (9 on M
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2/12/12Prokaryotic Bioenergetics All That Jazz aboutRedox ReactionsClass announcements1. Today Diagnostic assignments due2. Optional review sessions for first mid-term exam @Wednesday 10-12, Room TBDFriday Room and Time TBDBring your questions!3.
Maryland - BSCI - 207
Eukaryotic Diversity I1. Optional review sessions for 1st mid-term examWednesday 10-12, 2242 HJ PattersonFriday 3-4:30, Room TBDBring your questions!2. GSS sessions TH at 5-6 in PHYS 14023. Todd office hours at review session today4. Use your study
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Eukaryotic Diversity IPrinciples of Eukaryotic Diversity1. Optional review sessions for 1st mid-term examWednesday 10-12, 2242 HJ PattersonFriday 3-4:30, Room TBDBring your questions!2. GSS sessions TH at 5-6 in PHYS 14023. Todd office hours at rev
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Endosymbiosis and EukaryoticDiversity Todays GAEC & R 28.1Endosymbiosis and EukaryoticDiversity Todays GAE1)The role of models in BSCI 207 toassemble, visualize, and applyfundamental concepts2)Todays GAE construct physicalmodels of the process of
Maryland - BSCI - 207
Principles of Eukaryotic DiversityEukaryotic Diversity II1. Friday Endosymbiosis HW due2. Friday - GAE involves a computersimulation of diffusion3. One laptop per group of 3 or twolaptops per group of 4 or 5 withdownloaded app. Wolfram CDF Player,
Maryland - BSCI - 207
2/23/12Initial setup1. Open Wolfram CDF Player andRandomWalkCircles 5 simulation.Click Enable Dynamics button.2. Adjust the stimulation window byexpanding the inner square to fillthe screen as shown here.3. Open your Google account anduse the lin
Maryland - BSCI - 207
The Evolution of Plants They Made the Land GreenTheyDiffusion rate = Particles past circle 4Simulations #3-#5 Class results1. Next Friday HW5. Diffusion homework due. Available atHomework Assignment link.Ficks First Law of DiffusionJ = -DCxJare
Maryland - BSCI - 207
The Evolution of Plants They Made the Land Green, Part 2Bryophytes - non-vascular plantsThree phyla: liverworts, hornworts, mossesAbundant in moist habitatsPersistent gametophytes, ephemeral dependent sporophytesZygotes divide to form diploid embryos
Maryland - BSCI - 207
3/27/12 Announcements Friday in PLS 1140 at 9 and 10 AM Exams returned at end of class Lifes Fundamental Processes Structure and Function RelationshipsDevelopment Gas exchange Circula-on (intercellular
Maryland - BSCI - 207
Gas Exchange: Moving molecules(Mostly O2)BSCI 207: Organismal BiologyOrganismal perspectiveForm and functionDesign principlesEvolutionary surveyPhysics and phylogenyBSCI 105 / BSCI 106or AP Biology coursewww.vashonsd.wednet.edu/everest/itinerary
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Winter 2012Chapter 10 Discussion AssignmentName: Sadhvi SaxenaSection: 0103Paired vs. Unpaired StudiesFor the examples below, decide whether the study should be run as a paired study or anunpaired study. 1pt each1. You want to look at the impact of
Maryland - BIOM - 301
Discussion over Chapter 12Winter 2012Name_Sadhvi Saxena_Section_0103_ANOVA is a statistical test for analyzing 3 or more means. The results will tell us if atleast 1 mean is significantly different from the others but does not tell us which meansare
Maryland - BIOM - 301
Discussion over Chapter 12Winter 2012Name_Sadhvi Saxena_Section_0103_ANOVA is a statistical test for analyzing 3 or more means. The results will tell us if atleast 1 mean is significantly different from the others but does not tell us which means are
Maryland - BIOM - 301
LAST DISCUSSIONName: Sadhvi Saxena Section: 0103For the following, please fill in the appropriate statistical test that should be used to analyze the data. IFTHE TEST IS A PARAMETRIC TEST, determine if it is a ONE or TWO TAILED TESTWhat is the appropr
Maryland - BIOM - 301
Chapter 7 and Chapter 8 DiscussionSaxenaWinter 2012Name: SadhviSection: 0103All problems worth 2 ptsUnderstanding Sample Variability and the Central Limit Theorem1. The standard error is a measure of the sampling variability between possible sample
Maryland - BIOM - 301
Chapter 7 and Chapter 8 DiscussionWinter 2012Name: Sadhvi SaxenaSection: 0103All problems worth 2 ptsUnderstanding Sample Variability and the Central Limit Theorem1. The standard error is a measure of the sampling variability between possible sample
Maryland - BIOM - 301
Winter 2012Discussion Exercise #1Name: Sadhvi SaxenaSection:01031. Types of VariablesIt is important that you can identify different types of variables as Qualitative (nominal orordinal) and Quantitative (discrete or continuous). Identify the variab
Maryland - BIOM - 301
Sadhvi SaxenaBIOM 301Section 0103181920Age (years)212223
Maryland - BIOM - 301
Sadhvi SaxenaSection 0103The correlation coefficient is 0.88, meaning that there is a positive correlation, where thecommuting time in minutes tends to increase as the distance traveled (minutes) increases.The correlation is not perfect, but the linea
Maryland - BIOM - 301
Discussion Exercise #3Winter 2012Name: Sadhvi SaxenaSection:0103Probability1. List here the main issues that were discussed and how you decided to conduct thestudy.The way we chose the pasta was not random because they were not replaced, and it di
Maryland - BIOM - 301
Discussion Exercise #3Winter 2012Name: Sadhvi SaxenaSection:0103Probability1. List here the main issues that were discussed and how you decided to conduct the study.The way we chose the pasta was not random because they were not replaced, and it di
Maryland - BIOM - 301
Discussion Exercise for Chapter 5Winter 2012Name: Sadhvi SaxenaSection: 0103A. Binomial Distribution Sampling ExercisesBelow are 2 sampling exercises examining whether or not sample data follow a binomialdistribution. The goal is to demonstrate when
Maryland - BIOM - 301
Chapter 5Discrete Probability DistributionsLets start with Random Variables A random variable is simply a variable (x)whose value depends on the outcome of achance operation Lets say you want to roll 2 dice and find the sumtotal spots showing on to
Maryland - BIOM - 301
Chapter 12ANOVAAnalysis of VarianceSo Far:Statistical tests have all been aboutCOMPARISONS1 population tests: Does the Parameter =some value?2 population tests: Does Population A =Population B?Conceptually for a 2 sample ttestWe asked if the di
Maryland - BIOM - 301
Chapter 6Normal Probability DistributionsRemember:Random Variables single outcomedetermined by chanceQuantitativeDiscreteChapter 5ContinuousChapter 6Chapter 6:Continuous Random Variablea quantitative, continuous variableoutcome determined by
Maryland - BIOM - 301
Chapter 7Sample VariabilityFinally getting to the exciting stuffSo far-collecting data-simple descriptions of sample data-basic concepts of probabilityNow: final steps to turn data into usefulinformation making populationstatements based on sampl
Maryland - BIOM - 301
Introduction to Statistical InferencesChapter 8Topics 1) Inference: Point Estimates and IntervalEstimates 2) Confidence Intervals 3) Hypotheses 4) 1st statistical test of InferenceSample Data used to Estimate True Population Values Remember the
Maryland - BIOM - 301
Hypothesis Testing So far: Ho: = some value assume known Statistical Test: z-testChapter 9Inferences Involving OnePopulationToday 1. Confidence Interval for when is NOTknown 2. Hypothesis test: = some value when is NOT known 3. Confidence Int
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Review: Quantitative DataAnalyses so farOne population tests2 populations test=?1 = 2p=? known not knownDependentPairedBlocked (2trts)paired t-testIndependentUnpairedCRD (2trts)2 sample t-testz-testt-testz test2=?chi square testQuanti
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Carbohydrates1. What are the functions of carbohydrates in the human body?Carbohydrates are the main source for energy for cells, they spare protein for energy, they addbulk to foods, and they provide fibers. The sources are grains, fruits and dairy pr
Maryland - NFSC - 100
20:40Whatisnutritionalscience?NutritionalSciences:arethestudyofnutrientsinfoodandthebody,alsothehuman behaviorsrelatedtofoodNutrientsarethecomponentsoffoodthatarerequiredforthebodysbasicfunctioningTheessentialideaiswhatyoueatwillbecomeapartofyourbody
Maryland - NFSC - 100
1. What is a vitamin? What is a mineral?A vitamin is an organic compound that is vital to life and indispensible to body functions but isneeded only in minute amounts; they are noncaloric essential nutrients. The role of manyvitamins is to help make po
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Econ !00. Chapter 3 & 4 Practice ProblemsMULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) The above gure shows Bobby's indifference map for juice and snacks. Also shown are threebudget lines resul
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Answer KeyTestname: CHAPTER2_PRACTICE_PAPER1) B2) D3) D4) D5) D6) A7) A8) B9) B10) First, solve for Q = 45 - 2(1) + .3(20) + 1(1) = 50.Then price elasticity = -2(1/50) = -0.04.Cross price elasticity = 1(1/50) = 0.02.Income elasticity equals
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Practice Questions for Chapter 2: Supply and DemandMULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) Suppose the demand for Digital Video Recorders (DVRs) is given by Q=250 - .25p + 4pc, where1)Q
UC Davis - ECN - 100B
Answer KeyTestname: PRACTICE3-41) B2) B3) A4) D5) C6) A7) C8)See the above gure. Canned and fresh soups are perfect substitutes. A corner solution exists where John spends all$4 on canned soup.9) For each case, the best approach is to solve wh
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UC Davis - ECN - 100B
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UC Davis - ECN - 100B
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UC Davis - ECN - 100B
Econ 01Econ3100Practice Problems for Consumer and Producer Welfare, and Competitive EquilibriaMULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) You pay $15 for an all-you-can-eat mongolian buffet.
UC Davis - ECN - 100B
Econ 01Econ3100Practice Problems for Monopoly and Market PowerMULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) If a rm is able to set priceA) is a monopoly.B) it faces a downward-sloping demand
UC Davis - ECN - 100B
Econ 301Ecn 100Practice Problems on Oligopoly Pricing and StrategyMULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) In a sense, a cartel is self-destructive becauseA) it reduces consumer surplus.
UC Davis - ECN - 100B
MORE practice problems on Chapters 9, 11, and 13 (14)ECN 100MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.1) Economists claim that measuring society's welfare as CS + PSA) is inappropriate since
UC Davis - ECN - 100B
Inclass Exercise: You are the new CEO of PowerShooz, a company that converts tennis shoes into jetfuel. You have a highly automated process that requires no labor. Only shoes and capital are need for inputs. Yo
UC Davis - ECN - 100B
Econ 100Winter 2012Problem set 2Due January 271. Consider that the U.S. supply of ethanol follows the function S(p) = 5p, and that the USdemand for ethanol is D(p) = 13.5 2.5p. Without any government role, there are 9 Billiongallons/year transacted
UC Davis - ECN - 100B
Econ 100Winter 2012Problem set 1Due Friday January 20 in Class1. Find the derivative with respect to x for the following functions.a. f ( x ) = ax 3 + bx 2 + x ;b.f ( x ) = ax ln x ;2. What is the price elasticity of the demand curve Q(p) = a - bl
UC Davis - ECN - 100B
Econ 100Winter 2012Problem set 11. Find the derivative with respect to x for the following functions.a. f ( x ) = ax 3 + bx 2 + x ;b.f ( x ) = ax ln x ;2. What is the price elasticity of the demand curve Q(p) = a - bln(p)?dQ(p)b=dppdQ(p) pb
UC Davis - ECN - 100B
Econ 100Winter 2012Problem set 2Due January 271. Consider that the U.S. supply of ethanol follows the function S(p) = 5p, and that the USdemand for ethanol is D(p) = 13.5 2.5p. Without any government role, there are inequilibrium 9 Billion gallons/y
UC Davis - ECN - 100B
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UCLA - ENGR - 112
Theempiresofthefuturearetheempiresofthemind.SummaryWinstonChurchillWhatenablesglobalcapitalism?Theentrepreneurprovidesthecreativeforceinorderforcapitalism(freeenterprise)towork.Entrepreneursstrivetomakeadifferenceinourworldandcontributetoitsbetterm