125Syllabus2014(1) - Bioengineering 125 Computational Bioengineering Spring Quarter 2014 Grades will be based on homework(40 three quizzes(30 and an

125Syllabus2014(1) - Bioengineering 125 Computational...

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Bioengineering 125: Computational BioengineeringSpring Quarter, 2014Grades will be based on homework (40%), three quizzes (30%), and an original term project(30%). The projects will be carried out in teams of four students using simulation software.Results will be summarized in an oral presentation and submitted as a written report. Instructor:Jeff Hasty, 2121A Bonner, [email protected]Office hours: F 3-4PMTA’s: Omar Din, [email protected]John DeFriel, [email protected]Spencer Scott, [email protected]e-mail: Please send all class-related e-mail to the TAs first, then they willforward to the instructor if necessary.Texts:Required:Nonlinear Dynamics and Chaos, S. Strogatz. Optional: Mathematical Models in Biology, L Edelstein-Keshet; An Introduction to Systems Biology: Design Principles of Biological Circuits, U. Alon.TENTATIVE SCHEDULEMarch 31: One dimensional flows on the line (Strogatz Chapter 2); HW 1 assignedApril 2: Mass action kinetics, biochemical reaction example, into to bifurcationsApril 4:
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