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Unformatted text preview: (b) Suppose you see the following sequence HTHTHTTTTTHHTTHHTH . Compute the maximum likelihood probability of number of times he cheated. 3. See L7, Slide 10. Construct an HMM for the 3 sequences in the family using the red ovals as match states. Compute the probability that ALIL is a member of the family using both the forward and the viterbi algorithm. (You can make up numbers for transition probabilities). 4. What is an EST? What is a 5 EST? What is a 3 EST? If you wanted to search for possible function using protein sequence analysis, would you prefer 5 ESTs, or 3ESTs? Why? If you wanted to cluster ESTs, would you prefer 5ESTs, or 3ESTs?...
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This homework help was uploaded on 02/14/2008 for the course CSE 182 taught by Professor Bafna during the Fall '06 term at UCSD.
 Fall '06
 Bafna

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