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Unformatted text preview: 1.) Do problem 6.9 from the Supplement. Choose Chicken for your organism. Answer the following questions. a.) Print out and attach results of your BLAST. You should have 3 sequences. b.) Define the following terms or symbols: Query: Sbjct: Expect (and what does a very low score mean): ‘+’ symbol: Identities: Positives: Gaps: Gallus gallus: c.) What is the name and function of the protein with most similar match? d.) What is the FULL sequence of the most similar match? (Hint: you will have to do something not described in the Supplement). You can just paste it here. e.) Using the ‘rules of thumb’, how would you estimate relatedness of these two proteins? f.) What similarity matrix was used by BLAST? (You can find it on the output page). 2.) Do problem 6.10 parts a and b from the Supplement. For each problem give the name of the protein and paste the entire sequence of the Sbjct below....
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- Fall '07
- Bioinformatics, Surround sound, Sequence alignment, BLAST comparison software