Unformatted text preview: AI AL AS IA II IL IS LA LI LL LS SA SI SL SS 4 B) For each 2-letter word from the database sequence, find matching word in the neighborhood words table. Record for each 2-letter word the positions of the matching words in the query sequence: 2-letter words from database sequence Positions of matching word in query AS SS 4 SL LA AI IA AI IA C) Extend to the left and right of the word pairs that contain SL in the database sequence. a) Find the high scoring alignments if a maximum drop-off threshold of 2 is used. b) Find the high scoring alignments if a maximum drop-off threshold of 4 is used....
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This note was uploaded on 07/29/2010 for the course BIOC BIOC1805 taught by Professor Dr.brianwong during the Summer '09 term at HKU.
- Summer '09