This preview shows page 1. Sign up to view the full content.
Unformatted text preview: will calculate #1. Ramachandran plot; # 2. Ramachandran plots by residue type; # 3. Chi1-Chi2 plots; # 4. Main-chain bond length distributions; # 5. Main-chain bond angle distributions. These will need to be stored as plots. Repeat the above for the other PDB file. Comment on the quality of each PDB structure based on the PROCHECK/RAMPAGE plots as well as compare the two structures. Can you find anything that is unusual? Hand in: Upload to the WebCT: Your report containing the PROCHECK/RAMPAGE plots and your assessments on the two structures. Deadline: Midnight 5 th March, 2010...
View Full Document
This note was uploaded on 07/29/2010 for the course BIOC BIOC2811 taught by Professor Dr.q.hao during the Summer '10 term at HKU.
- Summer '10