Unformatted text preview: will calculate #1. Ramachandran plot; # 2. Ramachandran plots by residue type; # 3. Chi1-Chi2 plots; # 4. Main-chain bond length distributions; # 5. Main-chain bond angle distributions. These will need to be stored as plots. • Repeat the above for the other PDB file. • Comment on the quality of each PDB structure based on the PROCHECK/RAMPAGE plots as well as compare the two structures. Can you find anything that is unusual? Hand in: Upload to the WebCT: Your report containing the PROCHECK/RAMPAGE plots and your assessments on the two structures. Deadline: Midnight 5 th March, 2010...
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- Summer '10
- Ramachandran, Structural Bioinformatics Assignment, PDB files, bond angle distributions, bond length distributions