projects_c497

projects_c497 - CMPSC 497E: Graphs and networks in systems...

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CMPSC 497E: Graphs and networks in systems biology Project assignment 1, due Tuesday Oct. 20 It is now time to decide your term project topics. As a reminder, your will write a term paper due on the Monday after classes end. Your term paper should be a comprehensive and critical review of the literature on a network- related topic. Examples include a review of search problems in networks, a review of constructing metabolic networks and analyzing their properties, a review of dynamic modeling of biological networks etc. The goal of this assignment is to help you select your research topic. A list of topics is given below. For each topic several leads (papers, websites) are given, follow them to ±nd other relevant references. Choose a topic from these, or propose your own. If you have a hard time deciding, feel free to consult me by email. Write a short motivation for your proposed work, including a list of ref- erences. Suggested project topics 1. Select one from the following types of network models modeling growth/capacity constraints L. A. N. Amaral, A. Scala, M. Barth´ el´ emy and H. E. Stanley, PNAS 97, 11149 (2000) http://amaral.chem-eng.northwestern.edu/ S. N. Dorogovtsev, J. F. F. Mendes, Phys. Rev. E 62, 1842 http://sweet.ua.pt/ ~ f2064/ competition in evolving networks G. Bianconi, A.-L. Barab´asi, Europhys. Lett. 54, 436 http://www.nd.edu/ ~ networks optimization principles S. S. Manna, A. Kabakcioglu, Scale-free Network on Euclidean Space Optimized by Rewiring of Links . Phys. A, 36, L279 (2003) 1
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V Colizza, JR Banavar, A Maritan, A Rinaldo, Network Structures from Selection Principles
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projects_c497 - CMPSC 497E: Graphs and networks in systems...

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