Chimera Tutorial2

Chimera Tutorial2 - Chimera Tutorial 2009-2010 Monday, July...

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Chimera Tutorial 2009-2010 Monday, July 6, 2009
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Download your fles From WebCT Monday, July 6, 2009
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open the Chimera folder Monday, July 6, 2009
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1) Open Chimera 2) Open your structure by PDB ID (check the manual for which you need) 3) Open again, this time we are loading annotations 4) Annotations should be in the same folder and should be called annotations.cmd Monday, July 6, 2009
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An example annotation: The blue and pink are active sites. .. Where will your mutations go? Monday, July 6, 2009
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Go to PDB and fnd your protein using its identifer Monday, July 6, 2009
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Download the fasta sequence of your protein Once it is downloaded to your desktop, open the Fle Monday, July 6, 2009
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In windows, the notepad will open it without word wrap, so turn on word wrap Refer to PDB to identify the appropriate chain for your analysis, keep this on hand ex: 1uk4:A is the A chain of 1uk4 Monday, July 6, 2009
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1) Our mutant protein should be around somewhere depending on which group you are in. For this group it has its own fle.
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This note was uploaded on 04/26/2011 for the course MIMM 386 taught by Professor Malcolmbaines during the Spring '11 term at McGill.

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Chimera Tutorial2 - Chimera Tutorial 2009-2010 Monday, July...

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