BWT - Burrows-Wheeler-Transform Create all cyclic...

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Burrows-Wheeler-Transform Create all cyclic permutations of the input string. Sort them lexicographically. Output the last character of each permutation, and the position of the original text in the sorted table.

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Burrows-Wheeler-Transform • Source text: cacbcaabca • aabcacacb c 0 abcacacbc a 1 acacbcaab c 2 acbcaabca c 3 bcaabcaca c 4 bcacacbca a 5 caabcacac b 6 cacacbcaa b 7 cacbcaabc a8 <- original cbcaabcac a 9 •O u t p u t : cacccabbaa, 8
• Transformed input: cacccabbaa, 8 • Table: left side: sorted, right side: original a(1) -> c(1) 0 a(2) -> a(1) 1 a(3) -> c(2) 2 a(4) -> c(3) 3 b(1) -> c(4) 4 b(2) -> a(2) 5 c(1) -> b(1) 6 c(2) -> b(2) 7 c(3) -> a(3) 8 <- c(4) -> a(4) 9 Reversing the Burrows- Wheeler-Transform Output: cacbcaabca Å

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BWT back-end Move-to-front(MTF) encoding Index: 012 • Input: cacccabbaa, 8, Alphabet: abc • 2, cab 1, acb 1, cab 0, cab 0, cab 1, acb 2, bac 0, bac 1, abc 0, abc Output: 2110012010, 8
BWT back-end • Huffman coding or arithmetic coding. • Input: 2110012010, 8 • Encode MTF output string, add position (‘8’) to output in binary.

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Burrows-Wheeler Transform Forward Transform : bananas M’ bananas sbanana asbanan nasbana anasban nanasba ananasb M ananas b anas ban as banan bananas nanas ba nas bana s banana bnnsaaa,4 (Stable Sort: preserves original order of records with equal keys ) M contains all the suffixes of the text and they are sorted!
Burrows-Wheeler Transform Forward Transform Given an input text , 1. Form u permutations of T

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This note was uploaded on 06/09/2011 for the course CAP 5015 taught by Professor Mukherjee during the Spring '11 term at University of Central Florida.

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BWT - Burrows-Wheeler-Transform Create all cyclic...

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