lec4illustrated - MIT OpenCourseWare http/ocw.mit.edu 7.88J...

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MIT OpenCourseWare http://ocw.mit.edu 7.88J Protein Folding Problem Fall 2007 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms .
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Retrieving and Viewing Protein Structures from the Protein Data Base 7.88J Protein Folding Prof. David Gossard September 15, 2003
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PDB Acknowledgements The Protein Data Bank (PDB - http://www.pdb.org/ ) is the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Berman, H. M., J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne. “The Protein Data Bank.” Nucleic Acids Research 28 (2000): 235-242. (PDB Advisory Notice on using materials available in the archive: http://www.pdb.org/pdb/static.do?p=general_information/about_ pdb/pdb_advisory.html ) Data used in the “Retrieving, Viewing Protein Structures from the Protein Data Base” Lecture Notes for 7.88J - Protein Folding PDB site data on page 4 (“PDB Growth”) and 7 (“Not all Structures are Different”). PDB screenshots: pages 9 – 14. Pages 20-22 contain screen shots from ExPASy (SwissPDB): Appel, R. D., A. Bairoch, and D. F. Hochstrasser. “A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends.”
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