LecturesPart03

Aaccaaaaaagccagtgattctgcattctggcttgaggttgaaggtaattccat

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Unformatted text preview: CTGTAGATTGTTCAGAAGATTCATTTTGGCTTGATGTCCAAGGTGACTCTATGACAGCACCGGCAGGGTT-AAGC-A---TT-CCAGAAGGAATGATA 438 || || || | |||| |||||||| || ||||| | || ||||| ||||| |||| | |||| | || || || |||||| || 399 AACCAAAAAAGCCAGTGATTCTGCATTCTGGCTTGAGGTTGAAGGTAATTCCATGACCGCACCAACAGGCTCCAAGCCAAGCTTTCCTGACGGAATGTTA 498 400 • 420 • 440 • 460 • 480 • 440 • 460 • 480 • 500 • 520 • 439 ATTCTGGTTGATCCCGAAGTCGAACCAAGAAACGGCAAGCTGGTTGTTGCAAAATTAGAA--GGTGAAAACGAGGCCACATTCAAAAAATTAGTTATGGA 536 ||||| ||||| || || | | | | | | || | || || |||| | ||| || | | ||| || ||||| ||| | | | ||| 499 ATTCTCGTTGACCCTGA=G=C=AGGCTGTTGA=GCCAGG=TGATTTCTGCATAGCCAGACTTGGGGGTGATGAGTTTACCTTCAAGAAACTGATCAGGGA 593 500 • 520 • 540 • 560 • 580 • Method: Layout: Mismatch penalty: Gap penalty: Translation: Needleman-Wunsh -> Standard Smaller (1) Larger (3) Off • 20 • 40 • 60 • 80 • 100 1 ATGAGCACAAAAAAGAAACCATTAACACAAGAGCAGCTTGAGGACGCACGTCGCCTTAAAGCAATTTATGAAAAAAAGAAAAATGAACTTGGCTTATCCC 100 |||| ||| || || ||| | || ||| || || | || || | | || | || || | || | || | 1 ATGAATACACAATTGATGGG=TGAGCGTATTCGC=GCTCGAAGAAAAAAA=CTC===AA=G=A=TT=A=GACAAGCCGCTCT=TGG==TAAGATGGTGGG 86 • 20 • 40 • 60 • 80 • 120 • 140 • 160 • 180 • 200 101 AGGAATCTGTCGCAGACAAGATGGGGATGGGGCAGTCAGGCGTTGGTGCTTTATTTAATGGCATCAATGCATTAAATGCTTATAACGCCGCATTGCTTGC 200 || ||| | | ||| || | ||||| || | | | | || | | | | | || |||| || || | || | || | | 87 AGTG=TCTAATGTTG=CAATATCGCAATGGG==AG=C=G=C=TCGGAG====ACTGA==GCCA==AATGGGGAGAAC=CTGTTG==GCA=CTTT=C==G= 162 • 100 • 120 • 140 • 160 • 220 • 240 • 260 • 280 • 300 201 AAAAATTCTCAAAGTTAGCGTTGAAGAATTTAGCCCTTCAATCGCCAGAGAAATCTACGAGATGTATGAAGCGGTTAGTATGCAGCCGTCACTTAGAAGT 300 || | ||| | | | | || | ||| || | || | |||| | | ||| | | || | || | || | || | || 163 AAGGCTCTTCAGTGCTCCCCT=GACTA=TTT=GC==TGAAA==G===GAGATTTAAGCCAGACAAACGTTGCCTATCATA=GTAG==G=CA=TGAGCCAA 247 • 180 • 200 • 220 • 240 • 320 • 340 • 360 • 380 • 400 301 GAGTATGAGTACCCTGTTTTTTCTCATGTTCAGGCAGGGATGTTCTCACCTGAGCTTAGAACCTTTACCAAAGGTGATGCGGAGAGATGGGTAAGCACAA 400 ||| || | |||||| || | | || |||||| | | | | | | | ||| | | |||| ||| ||| | 248 GAGGATCA=TACCCTCTTATCAGTTGGGTAAGC...
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This note was uploaded on 01/13/2012 for the course BIO 101 taught by Professor Staff during the Fall '10 term at DePaul.

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