LecturesPart03

Ctgtagattgttcagaagattcattttggcttgatgtccaaggtgactctatga

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Unformatted text preview: GCAGGGCAATGGATGGAAGCTGTAGAACCTTATCACAAGCGCGCGATAGAGAACTGGCACGACACCA 346 • 260 • 280 • 300 • 320 • 340 • 420 • 440 • 460 • 480 • 500 401 CCAAAAAAGCCAGTGATTCTGCATTCTGGCTTGAGGTTGAAGGTAATTCCATGACCGCACCAACAGGCTCCAAGCCAAGCTTTCCTGACGGAATGTTAAT 500 | || || | |||| |||||||| || ||||| | || ||||| ||||| |||| | |||| | || || || |||||| |||| 347 CTGTAGATTGTTCAGAAGATTCATTTTGGCTTGATGTCCAAGGTGACTCTATGACAGCACCGGCAGGGTT=AAGC=A===TT=CCAGAAGGAATGATAAT 440 • 360 • 380 • 400 • 420 • 440 • 520 • 540 • 560 • 580 • 501 TCTCGTTGACCCTGAGCAGGCTGTTGAGCCAGGTGATTTCTGCATAGCCAGACTTGGGGGTGAT---GAGTTTACCTTCAAGAAACTGATCAGGGATAGC 597 ||| ||||| || || | || | | | || | | | | ||||| ||| || ||||| ||| | | | |||| 441 TCTGGTTGATCCCGAAGTCGAACCAAGAAACGGCAAGCTGGTTGTTGCAAAATTAGAAGGTGAAAACGAGGCCACATTCAAAAAATTAGTTATGGATGCA 540 • 460 • 480 • 500 • 520 • 540 Effect of gap penalty s Note “shrinking” of alignment as gap Note penalty increases Alignment server ExPASy (Expert Protein Analysis pert rotein nalysis System) Sy s Hosted at Swiss Institute of Bioinformatics s Contains dot matrix Java applet and Contains alignment web servers alignment s x http://www.expasy.org/tools/#align Reading for next class s Mount, rest of Chapter 3 s Mount, Chapter 4...
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