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Unformatted text preview: within the PDB file. Make a cartoons or ribbons picture of your protein using something like rasmol , pymol , VMD , or any other structure vi-sualization package. (most can be easily installed on any platform, including your laptop. Links to many of them are available on the PDB site). Attach the picture to your report. Find out what the Ramachandran Plot is and generate one for your protein. Attach to your report. Are there any alpha-helices in your protein? Very roughly, what percentage of residues in your protein is in alpha-helical conformation?...
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- Fall '08