Unformatted text preview: within the PDB file. • Make a cartoons or ribbons picture of your protein using something like rasmol , pymol , VMD , or any other structure vi-sualization package. (most can be easily installed on any platform, including your laptop. Links to many of them are available on the PDB site). Attach the picture to your report. • Find out what the Ramachandran Plot is and generate one for your protein. Attach to your report. • Are there any alpha-helices in your protein? • Very roughly, what percentage of residues in your protein is in alpha-helical conformation?...
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- Fall '08
- Diffraction, simple warm-up exercise