AlgFl03Fnl - CSE 5211/4081 PRINT NAME: Fall 2003 Final Time...

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CSE 5211/4081 Fall 2003 Final Time 115 min Points: 50(UG) 60(G) PRINT NAME: Status: Undergraduate / Graduate Std. 1. String Matching: Create an automaton for the following string cgatat , over a four alphabet set {a, t, c, g}. Use the automaton to find the string within T= cgcgcgatata . Draw the automaton and show the steps clearly. Automaton for string P: 0-c-1-g-2-a-3-t-4-a-5-t-6(Accept) Transition(*, c)=1, Transition(*, not c)=0, where * indicates any state Matching on string T using the above automaton: 0-c-1-g-2-c-1-g-2-c-1-g-2-a-3-t-4-a-5-t-6(A, print position-|P|=10-6=4)-a-0 2. Dynamic Programming: An optimization problem needs to find the best way to divide a list of numbers A. The formula for the optimal value between the I-th and the j-th elements is C(I,j) = A[I] when I=j, or C[I,j]=max{C(I,k)/C(k+1,j), for I k <j} when I<j, just like the matrix chain product problem. Run a dynamic programming algorithm over the list A=(2 2 2 2 3 2 2 2) in order to solve the problem. Complete the matrix over the following list and show at least a few sample steps for j=I+2, and j=I+3 toward the computation. C(I,j) j=1 2 3 4 5 I=1 2 1/2 4 1 2 2 4 1/2 2 1 3 8 2 4 4 4 2 5 2 Division is not associative, so, the result differs in which order one divides the chain. The algorithm is almost identical to the matrix chain product DP algorithm. 3.
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This note was uploaded on 02/10/2012 for the course CSE 5211 taught by Professor Dmitra during the Spring '12 term at FIT.

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AlgFl03Fnl - CSE 5211/4081 PRINT NAME: Fall 2003 Final Time...

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