lecture-14 - Practical Bioinformatics for Life Scientists...

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Practical Bioinformatics for Life Scientists Week 7, Lecture 14 István Albert Bioinformatics Consulting Center Penn State
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Installing/deploying tools we commonly need to download data or install a new bioinformatics tool standard procedures to manipulate compressed files and archives system setup and dependency setups computational resources at PSU and beyond
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For the MAC: homebrew it allows you to install libraries and tools
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Compressed archives may contain code or data mydata. zip mydata. gz mydata. bz2 mydata. zip mydata. tar.gz mydata. tar.bz2 single file multiple files and/or directories
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Zip compress/uncompress files are duplicated before and after compression/decompression the only format that works on all platforms without extra software zip files also exist under different use cases: python egg, java jar, java war
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gzip/bzip2 compress/uncompress in general use gzip/gunzip bzip2 has better compression rate but is is slower than gzip you can list multiple files on the command line it will compress them all
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lecture-14 - Practical Bioinformatics for Life Scientists...

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