lecture-17 - Practical Bioinformatics for Life Scientists...

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Practical Bioinformatics for Life Scientists Week 9, Lecture 17 István Albert Bioinformatics Consulting Center Penn State
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Midterm project instructions The last page of the handout is your midterm project (some of you have also already chosen a different topic) Download, install and run the tool with a demo data of your choice. Write a short report: about 2 pages text, screenshots, plots describing your experiences with the tool::purpose, input, output, usability, effectiveness, correctness etc. Compare it to other approaches if applicable. Submit your work electronically (Word or PDF document) as I plan to summarize these projects in a lecture If for some reason the tool assigned to you cannot be made operational please contact us and describe your problem. If the problem persists a you may pick a new project from the list. Your project is due next Tuesday (for people that are away this week it will be due one week after receiving it)
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A quick overview of projects Bioinformatics is very rich in tools and approaches But not all are well written very often we need to evaluate a tool We will quickly go over each project and I will comment on each
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Next big Topic: Protein - DNA interactions ChIP-Chip and ChIP-Seq studies ChIP Chromatin Immuno-Precipitation (used during sample preparation) Chip microarray technology to detect bound genomic locations Seq high throughput sequencing to detect bound genomic locations
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lecture-17 - Practical Bioinformatics for Life Scientists...

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