lecture-17-handouts - 10/18/2011 Midterm project...

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10/18/2011 1 Practical Bioinformatics for Life Scientists Week 9, Lecture 17 István Albert Bioinformatics Consulting Center Penn State Midterm project instructions The last page of the handout is your midterm project (some of you have also already chosen a different topic) Download, install and run the tool with a demo data of your choice. Write a short report: about 2 pages text, screenshots, plots describing your experiences with the tool::purpose, input, output, usability, effectiveness, correctness etc. Compare it to other approaches if applicable. Submit your work electronically (Word or PDF document) as I plan to summarize these projects in a lecture If for some reason the tool assigned to you cannot be made operational please contact us and describe your problem. If the problem persists a you may pick a new project from the list. Your project is due next Tuesday (for people that are away this week it will be due one week after receiving it) A quick overview of projects Bioinformatics is very rich in tools and approaches But not all are well written very often we need to evaluate a tool We will quickly go over each project and I will comment on each Next big Topic: Protein - DNA interactions ChIP-Chip and ChIP-Seq studies ChIP Chromatin Immuno-Precipitation (used during sample preparation) Chip microarray technology to detect bound genomic locations Seq high throughput sequencing to detect bound genomic locations
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This note was uploaded on 02/29/2012 for the course BMMB 597D taught by Professor Istvanalbert during the Fall '11 term at Penn State.

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lecture-17-handouts - 10/18/2011 Midterm project...

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