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lecture-24 - Practical Bioinformatics for Life Scientists...

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Practical Bioinformatics for Life Scientists Week 12, Lecture 24 István Albert Bioinformatics Consulting Center Penn State
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Midterm project report: ReadSeq data format conversion Note: not all conversions are valid! Usually you can only go from a complex format to a simpler one.
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BWA vs Bowtie 1 vs Bowtie 2 Testing on simulated reads BWA and realistic ones bowtie For both sensitivity (mapping rate) and specificity (correct alignments) We’ll keep a score along the way We all need to remember: both tools are triumphs of human ingenuity! bowtie2 bwa bwa bowtie2
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Short Read Archive Command line toolkit to convert from the sra format to fastq, ssf, csfasta formats
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Clone the wgsim repository on github
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lecture-24 - Practical Bioinformatics for Life Scientists...

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