Sequence alignmentmap format sequence reads alignment

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Unformatted text preview: cording to the query sequences. Blast Versions •  BLASTN: Compares a nucleo1de query to a nucleo1de database •  BLASTP: Compares a protein query to a protein database •  BLASTX: Compares a translated nucleo1de query to protein database •  TBLASTN: Compares a protein query to a translated nucleo1de database •  TBLASTX: Compares a translated nucleo1de query to a translated nucleo1de database hIp://blast.ncbi.nlm.nih.gov/ Typical Uses of BLAST •  Which bacterial species have a protein that is related in lineage to a certain protein with known amino ­acid sequence? •  Where does a certain sequence of DNA originate? •  What other genes encode proteins that exhibit structures or mo1fs such as ones thtat have been determined? Mul1ple Alignment •  A mul1ple sequence alignment is a sequence alignment of three or more biological seq...
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This note was uploaded on 02/10/2014 for the course CS 680 taught by Professor Staff during the Fall '08 term at Colorado State.

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