1 align sequences using mul0ple threads eg 4 cpus

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Unformatted text preview: rt read data (fasta files that primarily Illumina and 454). –  Finding data is pre\y trivial by either going to the NCBI website directly or using google. •  For example: googling “e coli k12 reference genome fasta file” will take you directly to the broad ins0tutes website and a link to the NCBI reference genome. NCBI Short Read Archive h\p://trace.ncbi.nlm.nih.gov/Traces/sra/ Using NCBI SRA If you can download a movie or a tv show then you can download short read data from SRA (it’s even easier)…. you just have to know what to look for: 1.  Go to the “search”. 2.  Type in organism name and strain if you know it. i.e. “Escherichia coli str. K ­12 substr. MG1655”. 3.  Look at query results then download. Running BWA Steps in using BWA Download and install BWA on Linux/Mac. If you...
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This note was uploaded on 02/10/2014 for the course CS 680 taught by Professor Staff during the Fall '08 term at Colorado State.

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