36 Pratt JM Petty J Riba Garcia I Robertson DH Gaskell SJ Oliver SG Beynon RJ

36 pratt jm petty j riba garcia i robertson dh

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36. Pratt, JM, Petty, J, Riba-Garcia, I, Robertson, DH, Gaskell, SJ, Oliver, SG & Beynon, RJ: Dynamics of protein turnover, a missing dimension in proteomics . Mol Cell Proteomics 2002, 1: 579-91. 37. Lian, Z, Kluger, Y, Greenbaum, DS, Tuck, D, Gerstein, M, Berliner, N, Weissman, SM & Newburger, PE: Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line . Blood 2002, 100: 3209-20. 38. Gerner, C, Vejda, S, Gelbmann, D, Bayer, E, Gotzmann, J, Schulte-Hermann, R & Mikulits, W: Concomitant determination of absolute values of cellular protein amounts, synthesis rates, and turnover rates by quantitative proteome profiling . Mol Cell Proteomics 2002, 1: 528-37. 39. Serikawa, KA, Xu, XL, MacKay, VL, Law, GL, Zong, Q, Zhao, LP, Bumgarner, R & Morris, DR: The Transcriptome and Its Translation during Recovery from Cell Cycle Arrest in Saccharomyces cerevisiae . Mol Cell Proteomics 2003, 2: 191-204. 40. Bennetzen, JL & Hall, BD: Codon selection in yeast . J Biol Chem 1982, 257: 3026-31. 41. Sharp, PM & Li, WH: The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications . Nucleic Acids Res 1987, 15: 1281-95. 42. Jansen, R, Bussemaker, HJ & Gerstein, M: Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models . Nucleic Acids Res 2003, 31: 2242-51. 43. Coghlan, A & Wolfe, KH: Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae . Yeast 2000, 16: 1131-45. 44. Jansen, R, Greenbaum, D & Gerstein, M: Relating whole-genome expression data with protein-protein interactions . Genome Res 2002, 12: 37-46. 45. Qian, J, Kluger, Y, Yu, H & Gerstein, M: Identification and correction of spurious spatial correlations in microarray data . BioTechniques (In Press). 46. Kumar, A, Agarwal, S, Heyman, JA, Matson, S, Heidtman, M, Piccirillo, S, Umansky, L, Drawid, A, Jansen, R, Liu, Y et al. : Subcellular localization of the yeast proteome . Genes Dev 2002, 16: 707-19. 13
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47. Mewes, HW, Frishman, D, Guldener, U, Mannhaupt, G, Mayer, K, Mokrejs, M, Morgenstern, B, Munsterkotter, M, Rudd, S & Weil, B: MIPS: a database for genomes and protein sequences . Nucleic Acids Res 2002, 30: 31-4. 48. Yan, JX, Devenish, AT, Wait, R, Stone, T, Lewis, S & Fowler, S: Fluorescence two- dimensional difference gel electrophoresis and mass spectrometry based proteomic analysis of Escherichia coli . Proteomics 2002, 2: 1682-98. 14
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