Cell differentiation, the process by which a cell is changed from a stem cell to a specialized cell, is controlled by relatively few regulatory proteins working in groups, called combinatorial control.
Although all cells in an organism contain the same DNA, they all have different structures and functions. Cell differentiation is the process by which a cell becomes specialized to perform a certain function.
In order to produce the correct type of cell, the cell must regulate gene expression. Eukaryotic cells regulate gene expression by organizing groups of transcription regulators to control expression of a single gene, a process called combinatorial control. The combinatorial control process typically employs both repressors that decrease gene transcription and activators that increase gene transcription. By employing repressors and activators simultaneously, it is ensured that exactly the right portions of the right genes are transcribed at exactly the right time. Often the regulatory DNA sequences, specific regions in DNA that control gene expression, lie very far apart on the DNA strand, with long stretches between them called spacers. The proteins that regulate transcription include, along with repressors and activators, chromatin-remodeling complexes (which make the gene more or less accessible to transcription proteins), histone-modifying complexes (which modify histones to make DNA more or less accessible for transcription), transcription factors (which recruit transcription proteins to the promoter and help initiate transcription), promoter regions (such as the TATA box, which is a DNA sequence that indicates where a genetic sequence should be read), and mediators (which tie multiple proteins of the other types together to ensure they function as a unit).