Recitation 1
Probability Review
Parts of the slides are from previous years recitation and lecture notes
Basic Concepts
A sample space S is the set of all possible outcomes of a
conceptual or physical, repeatable experiment. (S can be finite
or infinite.)
From nano to macro: Introduction to atomistic
modeling techniques
IAP 2007
Introduction to classical molecular xxx
dynamics
Lecture 2
Markus J. Buehler
Review
2007 Markus J. Buehler, CEE/MIT
Review
y
P1
P
A
x
z
P2
Figure by MIT OCW.
2007 Markus J. Buehl
6.581J / 20.482J
Foundations of Algorithms and Computational Techniques in Systems Biology
Professor Bruce Tidor
Professor Jacob K. White
6.581/ 20. 482J Problem Set #1
Due 5pm, Thursday, 24 February 2006
Discrete conformational search
Consider a system w
6.581J / 20.482J
Foundations of Algorithms and Computational Techniques in Systems Biology
Professor Bruce Tidor
Professor Jacob K. White
6.581/20.482J Pr oblem Set #2
Due 5:00 p.m. Tuesday, March 14th, 2006
1. Modeling the dynamics of a trapped ion. Her
6.581J / 20.482J
Foundations of Algorithms and Computational Techniques in Systems Biology
Professor Bruce Tidor
Professor Jacob K. White
6.581/20.482J Problem Set #4
Due: 5 PM Friday 4/14/06
Problem 1
The following model was proposed by Grifth (1971) to