Csci 3003 Midterm Exam #1 Review
Ive put together several topics that will be covered on the Midterm #1 exam and a list of example
questions to help in your studying. The exam will consist of a mix of
Overview of today
Today:
Review of concepts from last time
Statistics for differential expression analysis
Formatted printing
Reading from and writing to files in Matlab
Start on visualizing dat
Overview of today
Today:
Review of concepts from last time
Formatted printing
Reading from and writing to files in Matlab
- Visualizing data in Matlab
- Functions vs. scripts
Next time:
- Methods
Overview of today
Today:
Review of concepts from last time
Visualizing data in Matlab
- Functions vs. scripts
- Introduction to clustering
Plotting in Matlab
Visualizing your data is important!
Ma
Introduction to Matlab
Today:
Review of Matlab environment
Variables and expressions
Loading/viewing your data
Matrices and common matrix tasks
Next week: Spring break!
Following week
Introduc
Overview of today
Today:
Review of clustering
- More on clustering:
- K-means clustering
- Validating clusters
Introduction to clustering
What is clustering?
Process of grouping a set of objects (e
Overview of today
Today:
Review of concepts from last time
Matlab environment
Loading/viewing data
Variables expressions
Using matrices in Matlab
More on handling matrices
Functions for matrices
Overview of today
Today:
Quick review of functional analysis of clusters
Introduction to protein-protein interaction networks
Why are they important?
How can we measure them?
How are they useful
Overview of today
Today:
Review of concepts from last time
Matrices and matrix functions in Matlab
Functions for matrices
Loops and conditional statements in Matlab
Conditional statements
How
do
Overview of today
Today:
Go over Midterm #2 results
Review protein-protein interaction networks
More protein interaction network analysis
Midterm #2 summary
(Out of 75)
Median: 61/75 (81%)
Std.
Overview of today
Today:
Review of concepts from last time
Matrix functions and conditional statements
conditional statements
For and While loops in Matlab
Statistical measures for differential
Csci 3003: Introduction to Computing in Biology (Spring 2010)
Overview of wholegenome sequencing
technology
Prof. Chad Myers
Department of Computer Science and Engineering
University of Minnesota
cmye
Csci 3003: Introduction to Computing in Biology (Spring 2010)
Introduction to
programming
Prof. Chad Myers
Department of Computer Science and Engineering
University of Minnesota
[email protected]
What
Name: _
Csci 3003 Midterm Exam #1, Part I
Thursday, February 26, 2009
Guidelines (read carefully!)
The exam will have two parts. Part I will be written and will ask you to interpret short sections of
Csci 3003 Midterm Exam #2 Review
To help in your studying, weve put together several topics that will be covered on the exam. The exam
format will be similar to Midterm #1, and will consist of a mix o
Name: _
Csci 3003 Midterm Exam #2
Thursday, April 16, 2009
Guidelines (read carefully!)
The exam will only consist of one section, and you are allowed to use your notes, lab solutions, the
internet, M
CSci 3003: Introduction to Computing in Biology
Lab Assignment #1
5 points
Assigned: 1/20/10
Due: 1/26/10, 2pm
Goals of this lab:
Get practice using the Linux environment for writing and running Perl
CSci 3003: Introduction to Computing in Biology
Lab Assignment #2
15 points
Assigned: 1/27/10
Due: 2/2/10
Goals of this lab:
Become familiar with using public databases for browsing gene information,
CSci 3003: Introduction to Computing in Biology
Lab Assignment #3
15 points
Assigned: 2/3/10
Due: 2/9/10, before midnight
Goals of this lab:
(1)
(2)
(3)
(4)
Practice Perl syntax rules covered in class
CSci 3003: Introduction to Computing in Biology
Lab Assignment #4
30 points
Assigned: 2/10/10
Due: 2/23/10 (before midnight)
Goals of this lab:
Practice manipulating arrays.
Become familiar with using
CSci 3003: Introduction to Computing in Biology
Lab Assignment #5
20 points
Assigned: 3/3/10
Due: 3/19/10 (before midnight)
Goals of this lab:
Practice writing programs to accomplish complex tasks.
Pr
CSci 3003: Introduction to Computing in Biology
Lab Assignment #6
10 points
Assigned: 3/10/10
Due: Tuesday, 3/23/10 (before midnight)
Goals of this lab:
Become familiar with the Matlab interface.
Run/
CSci 3003: Introduction to Computing in Biology
Lab Assignment #7
20 points
Assigned: 3/24/10
Due: Tuesday, 4/6/10 (before midnight)
Goals of this lab:
Practice using Matlab to load/analyze data.
Lear
CSci 3003: Introduction to Computing in Biology
Lab Assignment #8
20 points
Assigned: 4/7/10
Due: Tuesday, 4/27/10 (before midnight)
Goals of this lab:
Practice using Matlab to load/analyze expression
Csci 3003: Introduction to Computing in Biology (Spring 2010)
Course Overview
Prof. Chad Myers
Department of Computer Science and Engineering
University of Minnesota
[email protected]
Welcome to CSci